RetrogeneDB ID:
retro_mputfur_1035
Organism:
Location:
GL896999.1:1638620-1639172 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.98 %
Coverage:
87.98 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1035
AGAACTAAGACTGGAATAACGAGGATAGCAAGAAAATCTGGCAACTTTTACATACCTGCA
GAACCTAATAAATTAGCATTTGTCTTCATGATCAGAGGTATCAATGGTGTGAACCCAAAG
ATTCAGAAGGTGTTGCAGCTTCTTCGCCTTCACCAGATCTTCAATGACAGCTCTGTTAAG
CTCCACAAGACTTTAGTTAACATGCTAAAGATTGTGGAACCTTATATAAGATGGGGGGAC
CCAAACCTGAAGTCAGTGAATGAATTGATCTACAAGCGTGGTTATGGCAAAATCAACCAG
AAGTGAATTGCCCTGACAGATAACACATTAATTGCCCAATCTCTTGGTAAATATGGCATT
ATCTGCATGGAGGATCTGATTCACAAAATCTATACTGTTAGAAAATGTTTCAAAGAAGCA
AATAACTTTTTATGGTCCTTCAAATTATCTTCTCCATGAGGAGGAATGAAGAAAAAGACC
ACCCATTTTGTAGAAGGTAGAGATGCTGGCAACAAAGAAGACTAGATTAATAGACTTATT
AGAAGGATGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RTEIRMARMARKAGNFYVPAEP-KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINK
RT.....R.ARK.GNFY.PAEP.KLAFV..IRGINGV.PK..KVLQLLRL.QIFN...VKL.K..VNML.IVEPYI.WG.PNLKSVNELIYKRGYGKIN.
Retrocopy
RTKTGITRIARKSGNFYIPAEPNKLAFVFMIRGINGVNPKIQKVLQLLRLHQIFNDSSVKLHKTLVNMLKIVEPYIRWGDPNLKSVNELIYKRGYGKINQ


Parental protein
KRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
K.IALTDNTLIA.SLGKYGIICMEDLIH.IYTV.K.FKEANNFLW.FKLSSP.GGMKKKTTHFVEG.DAGN.ED.INRLIRRMN
Retrocopy
K*IALTDNTLIAQSLGKYGIICMEDLIHKIYTVRKCFKEANNFLWSFKLSSP*GGMKKKTTHFVEGRDAGNKED*INRLIRRMN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide