RetrogeneDB ID:
retro_mputfur_104
Organism:
Location:
GL897073.1:1053605-1054883 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.97 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RBBP4
Parental gene aliases:
No gene alias available
Parental gene description:
retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887]

Genomic region (view in browser)





>retro_mputfur_104
ATGGCCGACAAGGAAGCAGCCTTTGATGACGCAGTGGAAGAACGTGTGATCAACGAAGAG
TACAAAATATGGAAAAAAACCACCCCTTTTCTTTACGATTTGGTGATGACCCATGCCCTG
GAGTGGCCTAGCCTAACTGCGCAGTGGCTTCCAGATGTAACCAGACCAGAAGGGAAAGAC
TTCAGCATTCATCGACTTGTCCTGGGAACACACACGTCCGATGAACAAAACCATCTTGTG
ATAGCCAGTGTGCAGCTCCCTAACGATGATGCTCAGTTTGATGCTTCACACTACGACAGT
GAGAAAGGAGAATTTGGAGGTTTTGGCTCAGTTAGTGGAAAAATTGAAATAGAAATCAAG
ATCAACCATGAAGGAGAAGTAAACCGGGCACGTTATATGCCCCAGAACCCTTGCATCATT
GCGACAAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTATACAAAACATCCTTCCAAA
CCAGACCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGGAGGGC
TATGGACTTTCTTGGAACCCAAATCTCAGTGGGCACTTACTTAGTGCTTCAGACGACCAC
ACCATCTGCCTCTGGGACATCAGTGCTGTTCCAAAGGAAGGAAAAGTTGTGGATGCGAAG
ACCATCTTTACAGGGCATACAGCAGTAGTAGAAGACGTTTCCTGGCATCTGCTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAACTTATGATCTGGGATACTCGTTCAAAC
AATACTTCCAAACCAAGCCACTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTTTCT
TTCAATCCTTACAGTGAGTTCATTCTGGCCACAGGATCAGCCGACAAGACTGTTGCCTTG
TGGGATCTGAGAAATCTGAAACTTAAGTTGCATTCCTTTGAATCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCGCCTCACAATGAGACCATTTTGGCTTCCAGTGGTACTGATCGC
AGACTGAATGTTTGGGATTTAAGTAAAATTGGAGAGGAACAATCCCCGGAAGATGCAGAA
GATGGACCACCAGAATTGTTGTTTATTCATGGTGGTCACACTGCGAAGATATCTGATTTC
TCCTGGAATCCCAGTGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAAGATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTACACTGATGAAGATCCTGAAGGAAGCGTGGATCCA
GAAGGACAAGGGTCCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADKEA-FDDAVEERVINEEYKIWKKSTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDS
MADKEA.FDDAVEERVINEEYKIWKK.TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDS
Retrocopy
MADKEAAFDDAVEERVINEEYKIWKKTTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDS


Parental protein
EKGVTEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD
EKG..EFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD
Retrocopy
EKG--EFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD


Parental protein
DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV
DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV
Retrocopy
DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV


Parental protein
ALWDLRNLKLKLHSFESHKDEIFQIKVVTWDKSVLISCFVLTFFKSFCASKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI
ALWDLRNLKLKLHSFESHKDEIFQ..........L.S............SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP.EPWVICSVSED.I
Retrocopy
ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPSEPWVICSVSEDKI


Parental protein
MQVWQMAENIYNDEDPEGSVDPEGQGS
MQVWQMAENIY.DEDPEGSVDPEGQGS
Retrocopy
MQVWQMAENIYTDEDPEGSVDPEGQGS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide