RetrogeneDB ID:
retro_mputfur_1044
Organism:
Location:
GL897000.1:2586549-2587336 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.34 %
Coverage:
99.62 %
Frameshifts:
1
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1044
GCTCATGGTCCCAAGAAGTATCTGAAGTGTGTAGCAGTTCCAAAGCATTGGATACTGAAT
AAACTGACCAGTGTGTTTGTCTCTCCTCCATCTACTGGTCCCCATAAGCTAGGAGAATGC
CTCCCTCTCACCATTTTCCTAAGGAACAGACTTAAGTAGCCCCCAACATGAGATAAAGTA
AAGAAGATCTGTATGTAGCATTTTATTAATATTGATGGCAAGATCTGAACTAATATAACC
CACCCTACTGGTTTTATGAGTCTCCTCAGCATTGTCAAGCCTGAAAAGAATTTCTGTCTG
ATCTGTGACACCAAGGGTTGCTTTTCTGTTCATCAGATTACTCCTGAGGAGGTCAAGTGT
AAGTTGTTAAAAGTGAGAAAAATCTTTGTGGGGACAAAAGAAGTCCCTCATCTGGTAGCC
CATGATGTTGGCACCATCTACTATTCTTGTCCACTCATCAAGGTGAAAGACACCATTCAG
ATTGATTTGGAAACTGGAAAAGATTACTGATTTCACCAAGTTTGACACTGGTAATATGTG
TATGTTGACCAGAGGTGCTAATCTGGGAAGAATTCATGTGATCATGAACAGAAAGAGATA
TCCTGGTTCTTTTAATGCAGTTCCCATGAAAGATACCAATAACAACAGATTTGCCAGCAG
GGTCTCCAACTTTTTTGTTATTGGCAAAGGCAACAAGTCATGTATTTCTCTTCCCTGTGG
GAAGTGTATCTACCTCACCATTGCTGAAGAGAGAAACTAGAGACTAGTAGTCAAACAGAG
CAGTGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRL
A.GPKK.LK.VA.PKHW.L.KLT.VF...PSTGPHKL.ECLPL.IFLRNRLK...T.D.VKKICM..FI.IDGK..T.IT.P.GFM...SI.K...NF.L
Retrocopy
AHGPKKYLKCVAVPKHWILNKLTSVFVSPPSTGPHKLGECLPLTIFLRNRLK*PPT*DKVKKICM*HFINIDGKI*TNITHPTGFMSLLSIVKPEKNFCL


Parental protein
IYDTKGRFAVHRITLEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGK-ITDFIKFDTGNLCMVTGGANLGRIGVITNRER
I.DTKG.F.VH.IT.EE.K.KL.KVRKIFVGTK..PHLV.HD..TI.Y..PLIKV.DTIQIDLETGK.ITDF.KFDTGN.CM.T.GANLGRI.VI.NR.R
Retrocopy
ICDTKGCFSVHQITPEEVKCKLLKVRKIFVGTKEVPHLVAHDVGTIYYSCPLIKVKDTIQIDLETGK\ITDFTKFDTGNMCMLTRGANLGRIHVIMNRKR


Parental protein
HPGSFDVVHVKDANGNSFAPRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
.PGSF..V..KD.N.N.FA.R.SN.FVIGKGNK..ISLP.GK.I.LTIAEER..RL..KQSSG
Retrocopy
YPGSFNAVPMKDTNNNRFASRVSNFFVIGKGNKSCISLPCGKCIYLTIAEERN*RLVVKQSSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide