RetrogeneDB ID:
retro_mputfur_1050
Organism:
Location:
GL897002.1:779735-780120 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.44 %
Coverage:
94.16 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL28
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L28 [Source:HGNC Symbol;Acc:10330]

Genomic region (view in browser)





>retro_mputfur_1050
ATCTCCACCCACCTGCAAGGGATAGTCTGTGCAACAGCTCCAGCTTCCTGATCAAGAAGA
ACAAACAGATATACAGCACCAAACCCAAGGAACTGAAGGTTTACAGTTCCTCCCCTACAA
TGAGCTGATTCACTGCAAGACTACGGGCGTGGCACAGTAATCAGAAAGCAAAAGCATAGT
GGTAGTCAGGAAGCAGACAACCGGCCAGCAGATACCTGTCAGCTCCCACCAGTGGACTTC
CATCAGTAAGAATGTCCGGGTTACACTTCGCAGAATCAGGCACATGATCCACAAGAACAA
GTACCAAGCAGAACTGCATATGGCTGCCATTCACAGCATCAACACCATCAGGAGCAGTCA
GAAGCCTATGATGGTGAAGAGGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSAHLQWMVVR-NCSSFLIKRNKQTYSTEPNNLKARNS-FRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSVRHMIR
.S.HLQ..V...N.SSFLIK.NKQ.YST.P..LK...S...YN.LIH.KT.GV......K..VVV.K...GQ..P..S...T.I.KN.R.TL...RHMI.
Retrocopy
ISTHLQGIVCA/NSSSFLIKKNKQIYSTKPKELKVYSS/LPYNELIHCKTTGVAQ*SESKSIVVVRKQTTGQQIPVSSHQWTSISKNVRVTLRRIRHMIH


Parental protein
KNKYRPDLRMAAIRRASAILRSQKPVMVKRK
KNKY...L.MAAI.....I..SQKP.MVKRK
Retrocopy
KNKYQAELHMAAIHSINTIRSSQKPMMVKRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide