RetrogeneDB ID:
retro_mputfur_1051
Organism:
Location:
GL897002.1:2062531-2063528 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.17 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1051
ATGATGAAAGTCGGAGTAAACAAATTTGGCTGTACTAGGCTCTTAGGCACCAGAACTGCT
TTTAACTCTGGTGAAGTAGGCATTGTTGCCATCAGTGATTCCTTCATTGACCTGCATTAC
ATGGTCCACAAATTCTAGTATGATTCCATCCATGGCAAATTCAACCACACAATGAAGACT
GAAAAAGTGAAATCTGTCATCAGAGGAAAACCCTCTGCATCCTCCAGGAGCAAGATCCAG
TCAGATCAAATGGCCCGGTACTGGTACTGAATACGATGTGGAATCCACAGGGGTCTTCAT
CAACATGGAGAAGTCTATGGCTCACTAGAAGGGTGGGACCAGGTGGTCATCTTCTCTGTC
CCTTCTGCTGATGCCCCCATGTCTATGATGAGTGTGAAACCATGAGAATATGATAACACC
CTCAATATTGTCAACAATGCTTCCTGCACCATGACCTGAATGGACCCTCCAGCCAAGGTC
ATCCATGACAAGTTTGGAATTGTGGACAGGACTCATGACCACAGTCCATGCCATCATTAC
CAGCCAGAAGACCATGAATGAGCCCTCTGGAAAGCTGTGCTGTGATGGCTAAGGGGCCAC
ACAGAACATCTATTCTGCTCCTATTGGCACCAGCAGGGCTATAGGAAAGATGATCCCTGA
GCTGAATGGTAAGTTTACTGGCATGGCCTTCTGTGCCCCTTTCCCCAATGTCTCAGTCAT
GCATCTGACCTGCTGCCTAGAGAAAGCTGCCAAATATGATGACATCAAGAAAGTGGTGAA
GCAGGCATTGGAGGACCTCCTCAAGGGCATGTTAGGCTATACTGAGGACCAGGTTGTCTC
TTGTGACTTTAACAGTGACCCCCACTCTTATATCTTCTATGCTGGGGCTAGCACTGCTCT
TGATGACTACTTTGTCAAGATCATTTGCCAGTTTGACAATGAATTTATCTATAACAACTG
GGTGGTAGACCTTATGGTCCAAATGGCCTCCAAGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGK-SISIFQERDP-ANIKWGDAGAEYVVESTG
M.KVGVN.FG....L.TR.AFNSG.V.IVAI.D.FIDL.YMV..F.YDS.HGKFN.T.K.E..K.VI.GK....I.QE.DP...IKW...G.EY.VESTG
Retrocopy
MMKVGVNKFGCTRLLGTRTAFNSGEVGIVAISDSFIDLHYMVHKF*YDSIHGKFNHTMKTEKVKSVIRGK/TLCILQEQDP/SQIKWPGTGTEYDVESTG


Parental protein
VFTTMEKAGAHLKGGAKR-VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVE-GLMTTVHAITATQKTVDGPSGKLWRD
VF..MEK..AH.KGG....VI.S.PSADAPM..M.V....YDN.L.IV.NASCT.....P.AKVIHD.FGIV..GLMTTVHAI...QKT...PSGKL..D
Retrocopy
VFINMEKSMAH*KGGTRW/VIFSVPSADAPMSMMSVKP*EYDNTLNIVNNASCTMT*MDPPAKVIHDKFGIVD\GLMTTVHAIITSQKTMNEPSGKLCCD


Parental protein
GRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAG
G.GA.QNI..A..G...A.GK.IPELNGK.TGMAF..P.PNVSV..LTC.LEKAAKYDDIKKVVKQA.E..LKG.LGYTEDQVVSCDFNSD.HS..F.AG
Retrocopy
G*GATQNIYSAPIGTSRAIGKMIPELNGKFTGMAFCAPFPNVSVMHLTCCLEKAAKYDDIKKVVKQALEDLLKGMLGYTEDQVVSCDFNSDPHSYIFYAG


Parental protein
AGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
A..AL.D.FVK.I...DNEF.Y.N.VVDLMV.MASKE
Retrocopy
ASTALDDYFVKIICQFDNEFIYNNWVVDLMVQMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide