RetrogeneDB ID:
retro_mputfur_1055
Organism:
Location:
GL897003.1:3067761-3068646 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.62 %
Coverage:
99.33 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1055
ATGTCTCTGTACCCATCTCTTGAAGACCTGAAGGTAGACAAAGTTATTCAGGCTCAAACT
GCCTTTTCTGCAAACCCTGGCAACCCAGCAATTTTGTCTGAAGCTTCTGCTCCCATCTCT
CAAGATGGAAATCTCTATCCTAAATTGTATCCGGAGCTCTTCCAGTACATGGGCCTGAGT
TTAAATTAAGAAGAAATCCGTGCAAATATGGCCGTGGTCCCTGGAGCACCAGTTCAGGGG
TTGGTGGCAAGACATTCTAGTATGAACTATATGGTGGCTCCTGTAACTGGTAATGATGTT
GGAATTCGTAGAGCAGAAATTAAGCAAGGGATTTGTGAAGTCATTTTGTGTAAGGATCAA
GATGGAAAAATTGGGCTCAGGCTTAAATCAATAGATAATGGCATATTTGTTCAGCTGGTC
CAGGCAAATTCTCCAGCCTCATTGGTTGGTCTGGGATTTGAGGACCAAGTACTCCAGATC
AATGGGGAAAACTGTGCAGGCTGGAGCTCTAATAAAGCACACAAGGTACTCGAACAGGCT
TTTGGAGAGAAGATTACTATGACTGTTCATGACAGGCCCTTTGAACGGACAGTTACCATG
CATAAGGATAGTACTGGACATGTTGGCTTTATCTTTAAAAATGGAAAGATAACATCCATA
GTGAAAGATAGTTCTGCAGCCAGAAATGGTCTTCTCACAGAACATAACATCTGTGAAGTC
AATGGGCAGAATGTCATTGGGCTGAAGGATTCTCAAATTGCAGACATACTGTCAACATCT
GAGACTGTAGTTACTATTACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAACGG
ATGGCACCAAGCATTATGAAAAGCCTGATGGATCATACCATTCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLYPSLEDLKVDKVIQAQTAFSANPGNPAILSEASAPISQDGNLYPKLYPELSQYMGLSLNEEEIRANMAVVPGAPVQGQLVARPSSMNYMVAPVTGND
MSLYPSLEDLKVDKVIQAQTAFSANPGNPAILSEASAPISQDGNLYPKLYPEL.QYMGLSLN.EEIRANMAVVPGAPVQG.LVAR.SSMNYMVAPVTGND
Retrocopy
MSLYPSLEDLKVDKVIQAQTAFSANPGNPAILSEASAPISQDGNLYPKLYPELFQYMGLSLN*EEIRANMAVVPGAPVQG-LVARHSSMNYMVAPVTGND


Parental protein
VGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTVRDRPFERTVT
VGIRRAEIKQGI.EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGL.F.DQVLQINGENCAGWSS.KAHKVL.QAFGEKITMTV.DRPFERTVT
Retrocopy
VGIRRAEIKQGICEVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLGFEDQVLQINGENCAGWSSNKAHKVLEQAFGEKITMTVHDRPFERTVT


Parental protein
MHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIP
MHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIP
Retrocopy
MHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEVNGQNVIGLKDSQIADILSTSETVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide