RetrogeneDB ID:
retro_mputfur_1056
Organism:
Location:
GL897003.1:3573204-3575141 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.42 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/TrEMBL;Acc:G9K4X7]

Genomic region (view in browser)





>retro_mputfur_1056
ATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCCTGCGTGGGTGTC
TTCCAGCATGGGAAAGTGGAAATAATTGCCAATGATCAGGGAAACCAGACCACCCCAAGT
TATGTCACCTTCATGGACATCGAACGATTGATTGGTGATGCTGCAAAGAACCAAGTTGCT
ATGAACCCTACCAACACAGTTTTTGATGCCAAATGCCTGATTGGATGGAGATTTGATGAT
GCTATTGTCCAGTCTGATATGAAGCATTCGCCTTGATGATGGTGAATGATGCTGGCAGGC
CCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGCTTTTATCCAGAGGAGGTGTCTT
CTATGGTTTTGATGAAAACGAAGGAAATCGCCGAGGCATATCTTGGGAAAACGGTTACCA
ATGCAGTTGTCACAGAACCTGCGTACTTCAATGATTCTCAGCATCAGGCTACGAAAGATG
CTGGAACTATTGCTGGTCTCAATGTACTTTGAATCATCAATGAGCCAACTGCTGCTGCTA
TTGCTTATGGCTTAGATAAAAAAGTTGGAGCTGAAAAGAATGTGCTGATCTTTGACTTAG
GAGGTGGCACTTTTGATATGTCAATCCTTACTATTGAGGATGGGATCTTTGAGGTTAAGT
CCACAGCTGGAGATACCCACTTAGGTGGAGAAGACTTTGACAACCGAATGGTCAACCATT
TTATTGCAGAGTTCAAGTGTAAACATAAGAAAGATATCAGTGAAAACAAGAGGGCAGTTC
GTCACCTCTGTACTGCTTGTGAACGTGCTAAGCATACACTTTCTTCCAGCACCCAGGCCG
GTATTGAGATTGATTTTCTGTATGAAGGAATCGACTTCTATACCTCTATCACTCATGCCC
AGCTTGAAGAATTAAATGCTGACCTGTTCCATGGCACCCTGGACCCTGTAGAGAAGGCCC
TATGGGATGTCAAGTTAGTCAAGTCTCAGATCCATGATATTATCCTGGTGGTTGGTTCTA
CCCATATCCCCAAGACTGAGAAACTTCTCCAAGATTTCTTCAATGGAAAGGAACTGAATA
AGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCTAGGCAGCCATCCTTT
CTGGAGACAAATCTGAAATTGTTCAAGATTTGCTGCTGTTGGATGTCACTGCACTTTCTC
TTGGCATTGAAACTACTGGAGGAGTCATGACTGTTCTCATCAAGCATAATACTACCATTC
CTACGAAACAGACACAGACCTTCACTACCTTTTCCGACAACCAGCCTGGTGTGCTTATTC
AGGTGTATGAAGGTGAGCATGCCATGACCAAGAACAACAACCTACTTGGAAAGTTTGAAC
TCACAGGCATACCTCCTGCTCCTTGTGACGTTCCTCAGATTGAGGTCACTTTTTATATTG
ATGCTAAGGGTATCCCCAATGTCTCTGTCGTGGATAAGAGCACAGGAAAAGAGAACAATA
TTACCATCACTAATGACAAGGGCTGCTTGAGCAAAGAAGATATTGAGCACATGGTCCAGG
AAGCTGAGAAGTACAAAGCTGAAGATGAGAAACAGCGGGACAAGTCGTCTTCCAAGAATT
CAATTGAGTCTTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGGCA
AGATAAATGATGAAGACAAACAGAAGATTCTTGACAAGTGCAATGAAACCATTAACTGGC
TTGATAAGAACCAGACTGCAGAGAAGGAAGAATCTGAACACCAGCAGAAAGAGTTGGAGA
AAGTCTGCAACCCCATCATCACTAAGCTGTACCAGGGTGCAGGGGGTATGCCAGGAGGAA
TGCCTGGAGGCTTCCCTGGTGGTGGAGTTCCTCCCTCTGGTCGTGCCTCCTCTGGGCCCA
CCACTGAAGAGGTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWP-FMVVNDAG
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGN.TTPSYV.F.D.ERLIGDAAKNQVAMNPTNTVFDAK.LIG.RFDDA.VQSDMKH.P..M.VNDAG
Retrocopy
MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNQTTPSYVTFMDIERLIGDAAKNQVAMNPTNTVFDAKCLIGWRFDDAIVQSDMKHSP/LMMVNDAG


Parental protein
RPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFD
RPKVQVEYKGETKSFYPEEVSSMVL.K.KEIAEAYLGKTVTNAVVT.PAYFNDSQ.QATKDAGTIAGLNVL.IINEPTAAAIAYGLDKKVGAE.NVLIFD
Retrocopy
RPKVQVEYKGETKSFYPEEVSSMVLMKTKEIAEAYLGKTVTNAVVTEPAYFNDSQHQATKDAGTIAGLNVL*IINEPTAAAIAYGLDKKVGAEKNVLIFD


Parental protein
LGGGTFDVSILTIEDGIFEVKSTAGDSHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKCTLSSSTQASIEIDSLYEGIDFYTSITR
LGGGTFD.SILTIEDGIFEVKSTAGD.HLGGEDFDNRMVNHFIAEFK.KHKKDISENKRAVR.L.TACERAK.TLSSSTQA.IEID.LYEGIDFYTSIT.
Retrocopy
LGGGTFDMSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKCKHKKDISENKRAVRHLCTACERAKHTLSSSTQAGIEIDFLYEGIDFYTSITH


Parental protein
ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
A..EELNADLF.GTLDPVEKAL.D.KL.KSQIHDI.LV.GST.IPK..KLLQDFFNGKELNKSINPDEAVAYGAAV.AAILSGDKSE.VQDLLLLDVT.L
Retrocopy
AQLEELNADLFHGTLDPVEKALWDVKLVKSQIHDIILVVGSTHIPKTEKLLQDFFNGKELNKSINPDEAVAYGAAV*AAILSGDKSEIVQDLLLLDVTAL


Parental protein
SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN
SLGIET.GGVMTVLIK.NTTIPTKQTQTFTT.SDNQPGVLIQVYEGE.AMTK.NNLLGKFELTGIPPAP..VPQIEVTF.IDA.GI.NVS.VDKSTGKEN
Retrocopy
SLGIETTGGVMTVLIKHNTTIPTKQTQTFTTFSDNQPGVLIQVYEGEHAMTKNNNLLGKFELTGIPPAPCDVPQIEVTFYIDAKGIPNVSVVDKSTGKEN


Parental protein
KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKEL
.ITITNDKG.LSKEDIE.MVQEAEKYKAEDEKQRDK.SSKNS.ESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE.INWLDKNQTAEKEE.EHQQKEL
Retrocopy
NITITNDKGCLSKEDIEHMVQEAEKYKAEDEKQRDKSSSKNSIESYAFNMKATVEDEKLQGKINDEDKQKILDKCNETINWLDKNQTAEKEESEHQQKEL


Parental protein
EKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
EKVCNPIITKLYQ.AGGMPGGMPGGFPGGG.PPSG.ASSGPT.EEVD
Retrocopy
EKVCNPIITKLYQGAGGMPGGMPGGFPGGGVPPSGRASSGPTTEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide