RetrogeneDB ID:
retro_mputfur_1060
Organism:
Location:
GL897004.1:6376080-6376554 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.13 %
Coverage:
57.25 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
ATPAF1
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase mitochondrial F1 complex assembly factor 1 [Source:HGNC Symbol;Acc:18803]

Genomic region (view in browser)





>retro_mputfur_1060
AGTGGGGTCGGGGCCGAGCTCAAGGCCAACCCCTTCTACGACCCCTACCTGGACAAGATC
CCACAGCTGTGCAGGTCTGACCCAGCCGCTTTTGAATCACGACTGGAAAAGTACATTGAG
TTTCTGAAGCAGCCAGTGGGGCACTCCAGGCAAGGTGACTTTATCAGATGTGTAGAACCA
AAGACAGACGCCCTGGGGACACAGCCTGTGAGTAGAGGATTCACTGAGGACAAGACTCTC
GGTTCCATCCTTAACACTGAGATGGCGAAAGACAAAACAGAGGAAATGAAACCGATTTCG
CAGCAGTATTTTGCAGCAAAAGATACGGTCTATGCAGTTATTCCTAAAGAGAAGTTTGAC
TTGATCTGGTCCCAGGCTCAGTCCTGTCCAACATTTCTCTGTTCGCTGCTACCAAGAAGG
GAAGGTTATTAGTTCTTTGTAGGACAACAGACAGGTACTGAACTCCACTGCACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AGVGAELEANPFYDRYRDKIQQLRRSDPAAFESRLEKRIEFRKQPVGHFRQGDFIKCVEQKTDALGKHPVSRGFTKGKTLSSIFNIEMVKDKTAEEVRQI
.GVGAEL.ANPFYD.Y.DKI.QL.RSDPAAFESRLEK.IEF.KQPVGH.RQGDFI.CVE.KTDALG..PVSRGFT..KTL.SI.N.EM.KDKT.EE...I
Retrocopy
SGVGAELKANPFYDPYLDKIPQLCRSDPAAFESRLEKYIEFLKQPVGHSRQGDFIRCVEPKTDALGTQPVSRGFTEDKTLGSILNTEMAKDKT-EEMKPI


Parental protein
WQQYFAAKDTVYAVIPKEKFDLIWSRAQSCPTFLCA-LPRREGYEFFVGQWTGTELHFT
.QQYFAAKDTVYAVIPKEKFDLIWS.AQSCPTFLC..LPRREGY.FFVGQ.TGTELH.T
Retrocopy
SQQYFAAKDTVYAVIPKEKFDLIWSQAQSCPTFLCSLLPRREGY*FFVGQQTGTELHCT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide