RetrogeneDB ID:
retro_mputfur_1062
Organism:
Location:
GL897004.1:1358521-1358949 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.63 %
Coverage:
87.28 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1062
CACGGATCACTGAGCCCAGGAGCCAGCCAGAAGGGTCCCCATTCCAGCACCGGCTCCTTC
TGCACACTCAATGGTCCTGGGGTAGGATGAAGCACTCTCCGAAGCCGTCAGGACTGGAGG
CACGGATTATGGAAAAGATGCTCGGTCCTAGCAGAGTCCTCCTCCTGGGGTTTGGATGCG
AGGTCAGAGTCCTGCTCCAGAGGAGAGAGCCCAGCTCTGAGGGCAAGGTTGCAGGCTTCA
TCACGCGGAGGCGCCGGGACCAGAAGCTTGCCAGAAGGGGAAGCCCCCGAAGGAAGTGGT
TTGGAGGGATAAGGGTGCTTAGCCTGGAAACCATAAAGTCTCTTGAAAGACAGAATCTTC
TTTCTGGCGCTTTCCTCTCCACCACCCTGATGAGCAGCCTGGATGGAGCCATGCGGTCCC
TGGAAATA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HESYSPGTGKKCSLS-RNWLLMHTQQYWCKFKHFLKPSVLNVEARLLEKIFGPSRVLLPGFEREFKVVLQMRKPNSEGKVEIFILGRRRYRKRAKRLIRI
H.S.SPG...K...S....LL.HTQ..W...KH..KPS.L..EAR..EK..GPSRVLL.GF..E..V.LQ.R.P.SEGK......G....R.R...L.R.
Retrocopy
HGSLSPGASQKGPHS/QHRLLLHTQWSWGRMKHSPKPSGL--EARIMEKMLGPSRVLLLGFGCEVRVLLQRREPSSEGK----VAGFITRRRRDQKLAR-


Parental protein
LTTKPRRKSCEGTMMLSLETMKSLEKENVHSSAFLSTTVMNSLDEAMQSLEI
....PRRK...G...LSLET.KSLE..N..S.AFLSTT.M.SLD.AM.SLEI
Retrocopy
-RGSPRRKWFGGIRVLSLETIKSLERQNLLSGAFLSTTLMSSLDGAMRSLEI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide