RetrogeneDB ID:
retro_mputfur_1069
Organism:
Location:
GL897006.1:3085577-3085962 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.74 %
Coverage:
81.53 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
PIGP
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046]

Genomic region (view in browser)





>retro_mputfur_1069
TCACCTTGGCCATGGCCAGAAAGAACAATTTATGGCTTTGTCCTTTTCTTAAGCTCCCAA
TTTGGCTTCATACTCTATCTTGCGTGGACCTTTATTCCTGAATCTTGGCTAAACTCCTTA
GGCTTAACCTGTTGGTCTCAAAAATCTTGGGCAGTGGCATTGCTTGTCTCCCTCCTCATT
ACCATCGTAACTGGCTGTGTACTCCTATTTGGAATAAACATGAGAAGTACCTCTCCACTC
AACGCCATTCATACAATCACAGATAACTATGCTAAAAATCCACAGCAGAAGAAATATCAA
GAAGAGACCATCTCAACACTAAGAGATATTCCAATTAGTGAAGCAAACCCCACATTCTTA
ACTTGCAGCCAAAGAACTTTATGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SPSPLPERAIYGFVLFLSSQFGFLLYLVWAFIPESWLHSLGLTYWPQKYWAVALPVYLLITIVIGYVLLFGINMMSTSPLNSIHTITDDYAKNQRQKKYR
SP.P.PER.IYGFVLFLSSQFGF.LYL.W.FIPESWL.SLGLT.W.QK.WAVAL.V.LLITIV.G.VLLFGINM.STSPLN.IHTITD.YAKN..QKKY.
Retrocopy
SPWPWPERTIYGFVLFLSSQFGFILYLAWTFIPESWLNSLGLTCWSQKSWAVALLVSLLITIVTGCVLLFGINMRSTSPLNAIHTITDNYAKNPQQKKYQ


Parental protein
EEAIPALRDIPISEVNQMFF-LATKEPYA
EE.I..LRDIPISE.N..F..LA.KE.YA
Retrocopy
EETISTLRDIPISEANPTFL\LAAKELYA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide