RetrogeneDB ID:
retro_mputfur_107
Organism:
Location:
GL896906.1:16415659-16416070 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.21 %
Coverage:
89.47 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PLP2
Parental gene aliases:
No gene alias available
Parental gene description:
proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087]

Genomic region (view in browser)





>retro_mputfur_107
ATGGTGGAGTCTGAGCGCACCTCAGCCCGTGGCTGCTGTACTACCTTCACTAATTTCTTG
TGCACCAGAAAGGGAACTCTCCTATTTGCTGAGACTATATTGTGCCTGGTGATTCTAATC
TGGTTCAGCATCTCAACACCAGGATACTCCACTCTGTCAGTGGTTGAGATGATCCTTGCT
GAGATCTTCTTTGTCATCTACATGTGTGACTTACCCACCAAGATACAATCCATCAACTGG
CCTTGGATTGATTTCTTCCGGTCCCTCATTGCCGTCACCCTCTACCTAATCACCTCCATT
GTTGTCCTTGTCAACAGAGGAAATCGCTCCATAATCATTGCAGGGGCACTGGGCCTTGCT
GCTGCATGCCTCTTTGGCTATGATGCCTACATCACCTACCCCTTGAGGTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVVEMILAAIFFVIYMCDLHTKIQIINWPWSDFFRTLIAAILYLITSI
M..SER.SA.GC....TNF..TRKG.LLFAE.ILCLVILI.FS.STPGYS.LSVVEMILA.IFFVIYMCDL.TKIQ.INWPW.DFFR.LIA..LYLITSI
Retrocopy
MVESERTSARGCCTTFTNFLCTRKGTLLFAETILCLVILIWFSISTPGYSTLSVVEMILAEIFFVIYMCDLPTKIQSINWPWIDFFRSLIAVTLYLITSI


Parental protein
VVLVEGGNHSKIIAGVLGLLATSLFGYDAYITFPLR
VVLV..GN.S.IIAG.LGL.A..LFGYDAYIT.PLR
Retrocopy
VVLVNRGNRSIIIAGALGLAAACLFGYDAYITYPLR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide