RetrogeneDB ID:
retro_mputfur_1084
Organism:
Location:
GL897011.1:1989587-1990198 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.04 %
Coverage:
63.72 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1084
CTGCTGGATCACTCTGAAGTTCTAGGCGGGCAGTGACATGCCTCGGTGGAACGTATTAAA
AAGACATATCAGAAATCAGCACTGAAGTGGCATCCTGAGAATAAACAAGAAGTGGAGAGA
AAACTCAAACAAGTAGCTGAGGTGCATGAAGTGTTATTAGATGCTAAAAAACAGGACGTC
TATGGTAAATATGTCAAAGAAGGATTAAATGGAGGTGGAGGTAGGACATTTTGACAGTCC
CTTTGAGTGTGGCTTCACTTTCCGAAACCCAGACCATGTCTTCAGGGTATTTTTTGGTGG
AAGGGACCCATTTTAATTCGGCTTCCTCAAAAACCCATTTGAGGACTTTTTTGGGGTCAA
GCAAATGGGTCCCTGCCAAAGGAGGTGAGGCAGAGGTTGTTTTTCTCTGCCTTCAGTGGA
TTTCCACCTTTTGGAGGAGAATTTTCTTCATTGATAGAGGATTTACTTCCTTTGGTTCAC
CAGGTCCGTGGGGCCTCACTTCATTTTCTTCCAAGACCTTTGGTGGTAGTGGGATGCCTA
ATTTCAAATCTGTATCACCTTCTACTAAAATTGTTAATGGCAGAAAAATCACTAGAACGG
GAATTGTCGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLNGGGGGI-HFDNPFEFGFTFRNPDDVF
..D..EVLG.Q.HAS.E.IKK.Y.K.ALKWH....PENK.E.ERK.KQVAE..EVL.DAKK.D.Y..Y.KEGLNGG.GG..HFD.PFE.GFTFRNPD.VF
Retrocopy
LLDHSEVLGGQ*HASVERIKKTYQKSALKWH----PENKQEVERKLKQVAEVHEVLLDAKKQDVYGKYVKEGLNGG-GGR\HFDSPFECGFTFRNPDHVF


Parental protein
REFFGGRDPFSFDFFEDPFEEFFGSRRGPRGSRNRSTGSF-FSAFSGFPSFGGGFPAF-DSGFTSFASPGHGGLTSFSSAAFGGSGMGNFKSISTSTKMV
R.FFGGRDPF.F.F...PFE.FFG........R....G.F.FSAFSGFP.FGG.F....D.GFTSF.SPG..GLTSFSS..FGGSGM.NFKS.S.STK.V
Retrocopy
RVFFGGRDPF*FGFLKNPFEDFFGVKQMGPCQRR*GRGCF/FSAFSGFPPFGGEFSSL/DRGFTSFGSPGPWGLTSFSSKTFGGSGMPNFKSVSPSTKIV


Parental protein
NGRKITTKRIVE
NGRKIT...IVE
Retrocopy
NGRKITRTGIVE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide