RetrogeneDB ID:
retro_mputfur_1088
Organism:
Location:
GL897011.1:4120754-4121194 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
77.18 %
Coverage:
67.27 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Processing of 4, ribonuclease P/MRP subunit [Source:UniProtKB/TrEMBL;Acc:G9KHV5]

Genomic region (view in browser)





>retro_mputfur_1088
TCCAAATACCTTTCTGCCAGGCAGAGGAGGGAGATGCACCTTTTTGAAATTGAGCCAGAG
CAGCAGAGCTACGGTCTTCTCGCCCTCTAAGAGAACTCTGAAAACAGTACCACCAGGACC
TGTGCAGTAGTCTCAACCCAGGCACGCAGCCACAGATGATTCAGGCCAAGCTCTTAAAGG
CAGATCTTCATGGGGCTCTTGTTTAGGTCACAAAATCCAAATGCACCTCATATGTGGGTG
TTACAGGAATCCTTCTACAGGAAACAAAGCACGTTTTCAAAATCCTCACCAAAGACCACC
TGAAGGTTATCCCCAAACTAAACTGTGCGTACACAATAAACATTGATAGCTTCATTTCCA
ACATTTATGGAAGCAAATTCCAGCTTCTGTCAAGTTAGCGATCTGCCAAGAAATTCAAAG
CAAAGGGAATAGTTGATCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SKGLSARQRRELHLFDIKPEQQRYSLFL-PLHELWKQYIRDLCGGLKPDTQPHMIQTKLLKADLHGALVSVTKSKCPSYVGVTGILLQETKHVFKILTKE
SK.LSARQRRE.HLF.I.PEQQ.Y.L...PL.EL.KQY..DLC..L.P.TQP.MIQ.KLLKADLHGALV.VTKSKC.SYVGVTGILLQETKHVFKILTK.
Retrocopy
SKYLSARQRREMHLFEIEPEQQSYGLLA/PLREL*KQYHQDLCSSLNPGTQPQMIQAKLLKADLHGALV*VTKSKCTSYVGVTGILLQETKHVFKILTK-


Parental protein
DRLKVIPKLNCVFAVEIDGFISYIYGSKFQLRSSERSAKKFKAKGTADL
D.LKVIPKLNC.....ID.FIS.IYGSKFQL.SS.RSAKKFKAKG..DL
Retrocopy
DHLKVIPKLNCAYTINIDSFISNIYGSKFQLLSS*RSAKKFKAKGIVDL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide