RetrogeneDB ID:
retro_mputfur_1090
Organism:
Location:
GL897012.1:1031967-1032382 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
53.7 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PIGX
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylinositol glycan anchor biosynthesis, class X [Source:HGNC Symbol;Acc:26046]

Genomic region (view in browser)





>retro_mputfur_1090
CTGGCTGCCAGGGCTGTGGGCATCCAGATGGTGGCCTCACAGGTCCTCTGGGATGTGGCT
GGGCTCACCAACACACCAGTTACAGTCTTCACTGCTGCCCCCACTGATCCTGGCACAAGG
GCTACTTGCTCTGAAATTATGCTGAGGCAAGGAGTTTTAAAAGATGGTTCCCACAGAGAA
CTTTTAATAAAAGTGAAATTTGGAGAAGATACTGAGCACTTAAATAGACCTGCTGACTTA
ATTAAACAGTACATCCTGACAGGACATTTCATGAATCCATATGAGTTGGCTTCATTTCAA
GAGAGAAATGTAACAGAGCAGGGATGGTTTCAGAAAACTTTAATATAGAAGCTCCCAATT
ATTTGTCCAAGGATTCTAAGGTTCAGTTTGTGCCAAATAAGATTCACAGTGCGTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAVTAVVVQAVAWLHLWEAAGLT-TPATAFTATPTDAGIRATCSEIILRQEVLKDGFHRDLLIKVKFGESIEDLQTCRLLIKQYIPTGLFVDPYELASLR
LA..AV..Q.VA...LW..AGLT.TP.T.FTA.PTD.G.RATCSEI.LRQ.VLKDG.HR.LLIKVKFGE..E.L.....LIKQYI.TG.F..PYELAS..
Retrocopy
LAARAVGIQMVASQVLWDVAGLTNTPVTVFTAAPTDPGTRATCSEIMLRQGVLKDGSHRELLIKVKFGEDTEHLNRPADLIKQYILTGHFMNPYELASFQ


Parental protein
ERNITE-AVMVSEDFNIEAPNYLSKESEV-LIYARQDSQCI
ERN.TE.A.MVSE.FNIEAPNYLSK.S.V....A..DSQC.
Retrocopy
ERNVTE/AGMVSENFNIEAPNYLSKDSKV/SVCAK*DSQCV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide