RetrogeneDB ID:
retro_mputfur_1095
Organism:
Location:
GL897012.1:1723347-1723702 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.31 %
Coverage:
98.36 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
Gm2178
Parental gene aliases:
No gene alias available
Parental gene description:
predicted gene 2178 [Source:MGI Symbol;Acc:MGI:3780348]

Genomic region (view in browser)





>retro_mputfur_1095
GCGTTCACAGTGGTCTGGCGTTTGACATTCCGCAGCAGGCTGTCCTATAATATAGCTTCT
AATAAAAATAGGCTGTCTTGAGCCCCTGGTAATAGGATCATTTACCTTTATACCAAAGAG
GTTGGGAAAACACCAAAATCTGCATGTGGTGTGTGTCTAGACCTACTTTGAAGAGGAGTT
TGTGCTGGGAGAACTCAAGTCCTTATGAGGTTGTCTGAAAACGAGAAAACACCTCAGCAG
GACCTACGGTGGTTCCTTGTGTGTTCTTGACAGGATCAAGTGTGCTTTTCTTACTGAGGA
GCAGAAAATTGTTGTGAAAATGTTGAAGGCACATCCACAGAGTCAGGAAGCTAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AFRMVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRL-RGVRAVRPKVLMRLS-KTKKHVSRAYGGSMCAKCVRDRIKRAF
AF..V.RLT.R.RLSYN.ASNK.RLS..PGNRI.YLYTK.VGK.PKSACGVC...L.RGV.A.R..VLMRLS.KT.KH.SR.YGGS.C...V.DRIK.AF
Retrocopy
AFTVVWRLTFRSRLSYNIASNKNRLS*APGNRIIYLYTKEVGKTPKSACGVCLDLL*RGVCAGRTQVLMRLS\KTRKHLSRTYGGSLC---VLDRIKCAF


Parental protein
LIEEQKIVVKVLKAQAQSQKAK
L.EEQKIVVK.LKA..QSQ.AK
Retrocopy
LTEEQKIVVKMLKAHPQSQEAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide