RetrogeneDB ID:
retro_mputfur_1098
Organism:
Location:
GL897013.1:6547573-6548104 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.92 %
Coverage:
54.72 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
UBLCP1
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-like domain containing CTD phosphatase 1 [Source:HGNC Symbol;Acc:28110]

Genomic region (view in browser)





>retro_mputfur_1098
ATAAAAGAGTATAAAGTGGAAATTTTGAATCCTCCCAGGGAAGGAAAAAAGCTTTTGGTA
CTAGATGTTGGTTATACATTATTTGACCGTAGGTCTTGTGCAGAGACTGGGATAGAATTT
ATGCGGCCATATCTTCATGAGTTCCTAACATCTGCATATGAGGATTATGACATTGTTATT
TGGTCCACAACAAATATGAAGTGGATTGAAGCTAAAATGAAAGAGCTTGGAGTGAGCACA
AATGCAAATTATAAGATTACCTTCATGTTGGACAGTGCTGCTATGATAACTGTGCATACT
CCAAGGAGAGGATTAATAGATGTAAAACCTCTTGGTGTTATATGGGGGAAGTTTTCAGAG
TTTTACAGAAAAAAAATACCATAATGTTTGATGACATAGGAAGAAATTTTCTAATGAACC
CACATTAGTCCACAGAATGGATTAAAGATAAGGCCTTTTATGAAAGCACACTTAAATTGA
GATAAAGACAAAGAACTTTTAAAGTTAACTCAGTACCTCAAGGAGATAGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHT
.KEYKVEILNPPREGKKLLVLDV.YTLFD.RSCAETG.E.MRPYLHEFLTSAYEDYDIVIWS.TNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHT
Retrocopy
IKEYKVEILNPPREGKKLLVLDVGYTLFDRRSCAETGIEFMRPYLHEFLTSAYEDYDIVIWSTTNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHT


Parental protein
PRRGLIDVKPLGVIWGKFSEFY-SKKNTIMFDDIGRNFLMNPQ---NGLKIRPFMKAHL-NRDKDKELLKLTQYLKEIA
PRRGLIDVKPLGVIWGKFSEFY.....TIMFDDIGRNFLMNP.......K...F....L.N.DKDKELLKLTQYLKEIA
Retrocopy
PRRGLIDVKPLGVIWGKFSEFY/QXXXTIMFDDIGRNFLMNPH*STEWIKDKAFYESTL\N*DKDKELLKLTQYLKEIA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide