RetrogeneDB ID:
retro_mputfur_1100
Organism:
Location:
GL897015.1:2354610-2355203 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.51 %
Coverage:
73.61 %
Frameshifts:
6
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1100
GAGGACAAGAAGGGGATCCCCAACACCAAACTGGGTTGCCTAGTCAAGGACATGAAGATC
ACGTCCCTGGAGGGGATCAGCCTCTCCTCCCTGCCCATCAGAGAATCTGAGATTATTGAT
TCTTTCCTGGGGCATCCTTCAGGAATGGGGTTTTGAAGCCTCTGCCAGTGCAAAAGCAGA
CCCATGCTGGCTAGCAGACCAGGTTCAAGGCATTTTTTGCCCTTGAAGACGACCATTGGA
CACGTTGGTCCGGGTGGTGGGTGCTCCAAGGAAGTCGTCACTGCCACAGGTAGGGCCATG
ATCCTGGCCACATCTTTCCAGCATCTTGTGCGGCGAGGCTACTGGGGGAACAAGACCGAC
AGCCCCACAGTGTCCCGTGCAAGATGACAGGCTGCTGTGGCTCTCCATGCGAGAGCATCT
CCTCCCCGCCCCCTGAGGCCCTGGCATTGTCTCAGCCCCTGTGCCCAAGAGGCTACAGAT
GACGGCCCATCTGAAGACAGCTGCCCCTCGGCCAGGGACTCTACTGTCCCTCTGGGCAAC
TTCATCAAAGCCACCCTGACACCATCCCCAAGACCCACAGCTGTCTCTCCCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIID-FFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN-GHVGLGVKCSKEVATAIRG
EDK..IP.TKLG.LVKDMKI.SLE.I.L.SLPI.ESEIID.FF.GAS....VLK..PVQKQT.AG..TRFKAF.A..D...GHVG.G..CSKEV.TA...
Retrocopy
EDKKGIPNTKLGCLVKDMKITSLEGISLSSLPIRESEIID/FFPGASFRNGVLKPLPVQKQTHAG*QTRFKAFFALEDDH\GHVGPGGGCSKEVVTATGR


Parental protein
AIILAKLSIVPVRRGYWGNKIG-KPHTVPCKVTGRCGSVLVRL-IPAPRGTGI-VSAPVPKKLLMMAGI-DDCYTSARGCTATLGNFAKATF-DAISKTY
A.ILA......VRRGYWGNK....PH.VPCK.TG.CGS.......P.P......VSAPVPK.L.M.A....D...SAR..T..LGNF.KAT..D.I.KT.
Retrocopy
AMILATSFQHLVRRGYWGNKTD/QPHSVPCKMTGCCGSPCESISSPPPEALAL/VSAPVPKRLQMTAHL/EDSCPSARDSTVPLGNFIKATL/DTIPKTH


Parental protein
SYLTP
S.L.P
Retrocopy
SCLSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide