RetrogeneDB ID:
retro_mputfur_1101
Organism:
Location:
GL897016.1:4095057-4095938 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.15 %
Coverage:
58.82 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1101
ATGTCCATCAGGGTAACCCAGAAGTTCTACAAGGTGTTCCCTCCCACCCTCAGGTTTTCA
GGAACCACTCACACTCCAGAGCACCTGAAGCCCACATCAAGTCCCCAGCCTTCTCCCAGA
CGGACAGCAGCAACAGCTTCCAGGGTCGTCTGGACACCAGCATGAGTATGGTTAGAGACT
ACAGCAGGGCCAGGCAAATGTAGGGCATCACAGCTGTCTCAGTGAACCAGAGCCTGCTGA
GCCCCCTCAAGCTGGAGGCAGACCCCAACATCCAGGCTGTGCAACACCCAGGTGAAGGAA
CGGATCAAGACCCTCAACAAGTTTGCCTCCAACCACAAGCTGTGGCACCTGGAGCAGCAG
AACAAAATTCTGGAGACCAAGTGGAGCCTCCTACAGCAGGAAAACACCACTGGGAGCAAT
ATGGACAACACATTCCAGAGCTCCATCAACAATCTCTGGTGGCAGCTCAACACATTGGGT
CAGGGGAAGTGGAAGCTGGAGGTGGAGCTTGGCAATAGGCAGGAGCTAGTGGAGGATTTC
AAAATAAGTACAAGGAGGAGATCAAAGAGAGTGCAGACCTGAAGAATGAATTTGTCCTCA
TCAAGAAGGATGTGGACGAAGTTTACATGAACAAGGTAGAGCTGGAGTCCTGCTGGGAAG
GAGCTGACAGATGAGTTCAGCTTTTTAAGTCAGCTTATGAAGGAATTTGTGAGCTGTAGT
CCCACGTCTTGGACACATCCATGGTGCTGTCCATGGACAACAGCCACTCCTTGAACCTGG
ACAGTATCATCGCCAAGGTCAAGGACATCACCAACCACAGCTAGGCTGAAGCTGAGACCA
CATACCAGATCAAGTACAAGGAGCCTCAGGCATTTGCTGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSVRVTQKSYKVST-SGPRAFSSRSYTSGPGSRISSSAFSRV--GGSFRGGLNSSMSVVGGYGGGAGGMGGITAVSVNQSLLSPLKLEVDPNIQAVR-TQ
MS.RVTQK.YKV...S.P..F...S....P...I.S.AFS......SF.G.L..SMS.V..Y...A..M.GITAVSVNQSLLSPLKLE.DPNIQAV..TQ
Retrocopy
MSIRVTQKFYKVFP/SHPQVFRNHSHSRAPEAHIKSPAFSQTDSSNSFQGRLDTSMSMVRDYSR-ARQM*GITAVSVNQSLLSPLKLEADPNIQAVQ\TQ


Parental protein
EKEQIKTLNNKFASFIDKVRHLEQQNKVLETKWSLLQQQKTARSNIDNMFESYISNLRRQLDTLGQEKLKLEVELGNMQGLVEDFK-NKYEEEIKERADM
.KE.IKTLN.KFAS...K..HLEQQNK.LETKWSLLQQ..T..SN.DN.F.S.I.NL..QL.TLGQ.K.KLEVELGN.Q.LVEDFK.NKY.EEIKE.AD.
Retrocopy
VKERIKTLN-KFASN-HKLWHLEQQNKILETKWSLLQQENTTGSNMDNTFQSSINNLWWQLNTLGQGKWKLEVELGNRQELVEDFK/NKYKEEIKESADL


Parental protein
ENEFVLIKKDVDEAYMNKVELESRLEG-LTDEINFL-RQLYEEEIRELQSQISDTSVVLSMDNSRSLDLDGIISEVKAQYEDIANRSRAEAETMYQIKYE
.NEFVLIKKDVDE.YMNKVELES..EG.LTDE..FL....YE..I.EL.S...DTS.VLSMDNS.SL.LD.II..VK....DI.N.S.AEAET.YQIKY.
Retrocopy
KNEFVLIKKDVDEVYMNKVELESCWEG\LTDEFSFL/KSAYEG-ICEL*SHVLDTSMVLSMDNSHSLNLDSIIAKVK----DITNHS*AEAETTYQIKYK


Parental protein
ELQTLAG
E.Q..AG
Retrocopy
EPQAFAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide