RetrogeneDB ID:
retro_mputfur_1103
Organism:
Location:
GL897016.1:1718760-1719711 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.32 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1103
ATGACTGAGCAGATGACACTTTGTGGCACCCTCAAGGGCCACAACGGCTGGGTGACTCAG
ATCGCCACGACTCCCCAGTTCCCGGACATGATACTGTCCGCCTCTCGAGATAAGACCATC
ATCATGTGGAAGCTGACCAGGGATGAGACTAACTATGGCATCCCTCAGCGTGCTCTTTGG
GGTCATTCCCACTTTGTCAGTGATGTGGTCATCTCCTCAGATGGCCAGTTTGCCCTCTCC
AGCTCCTGGGATGGAACCCTTTGTCTCTGGGATCGCACAACGGGTACCACCACATGCAGA
TTTGTAGGACATACCAAGGATGTGCTGAGTGTGGCCTTCTCCTCTGACAACCAGCAAATT
GATTCTGGCTCCCGAGATAAAACTATCAAGCTGTAGAATACTCTGGGTATATGCAAATAT
ACTGTCCAGGATGAAAGCCATTCGGAGTGGGTATCTTGTGTCCGATTCTCACCCAATAGC
AGCAATCCCATTATTGTCTCCTGTGGCTGGGACAAGCTGGTCAAGGTATGGAACTTGGCA
AACTGCTTGCTGAAAACCAATCACATCGGCCACACGGGCTACCTGAACACTATAACTGTC
TCTCCAGATGGATCCCTCTGCGCTTCTGGAGGGAAGGATGGCCAGGCCATGCTGTGGGAT
CTCAACGAAGGCAAACACCTCTATACACTCGATGATGGGGACATCATCAATGCTCTGTGC
TTCAGTCCTAACCGATACTGGCTCTGTGCTGCCATGGGCCCCAGCATTAAGATCTGGGAC
TTGGAAGGCAAGATCATTGTAGATGAACTAAAGCAAGAAGTTATCAGTACGAGCAGCAAG
GCAGAGCCACCTCAGTGTACCTCTCTGGCCTGGTCTGCTGATGGCCAGACTCTGTTTGCT
GGCTACACAGACAACCTGGTGCGTATGTGGCAGGTGACCATCGGCACCCGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR
MTEQMTL.GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL.GHSHFVSDVVISSDGQFALS.SWDGTL.LWD.TTGTTT.R
Retrocopy
MTEQMTLCGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALWGHSHFVSDVVISSDGQFALSSSWDGTLCLWDRTTGTTTCR


Parental protein
FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV
FVGHTKDVLSVAFSSDN.QI.SGSRDKTIKL.NTLG.CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC.LKTNHIGHTGYLNT.TV
Retrocopy
FVGHTKDVLSVAFSSDNQQIDSGSRDKTIKL*NTLGICKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCLLKTNHIGHTGYLNTITV


Parental protein
SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALGFSPNRYGLRAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA
SPDGSLCASGGKDGQAMLWDLNEGKHLYTLD.GDIINAL.FSPNRY.L.AA.GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA
Retrocopy
SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDDGDIINALCFSPNRYWLCAAMGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA


Parental protein
GYTDNLVRVWQVTIGTR
GYTDNLVR.WQVTIGTR
Retrocopy
GYTDNLVRMWQVTIGTR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide