RetrogeneDB ID:
retro_mputfur_1110
Organism:
Location:
GL897019.1:3493635-3493891 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
67.78 %
Coverage:
57.89 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPS18
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]

Genomic region (view in browser)





>retro_mputfur_1110
TCGTTAGTGATTCCTGAGAATTCCAGCACATTTGTGAGTACTCAACACCAATATCAATGG
GCAGTGGAAAACAGCCTTTGCCATCATTGCAGTTAAGGGTGTGGGGCAAAGATACATGAT
GTTGAGGAAAGCAGACATTGCCCTCACCATGGGATCAGGAGATTTCCCTGAGGATGAGGT
GGAATGTGTGATTACCATTATGCAGAATCCATACCAGTATAAGATCCCAGACTAGTTCTG
AAATATACAAAATGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SLVIPE-KFQHI-LRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKD
SLVIPE..FQHI.L.VLNTNI.G..K.AFAI.A.KGVG.RY....LRKADI.LT...G...EDEVE.VITIMQNP.QYKIPD.F.N.Q..
Retrocopy
SLVIPE/EFQHI/L*VLNTNINGQWKTAFAIIAVKGVGQRY--MMLRKADIALTMGSGDFPEDEVECVITIMQNPYQYKIPD*F*NIQNE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide