RetrogeneDB ID:
retro_mputfur_1112
Organism:
Location:
GL897019.1:2276584-2276859 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.89 %
Coverage:
97.85 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
HIGD1A
Parental gene aliases:
No gene alias available
Parental gene description:
HIG1 hypoxia inducible domain family, member 1A [Source:HGNC Symbol;Acc:29527]

Genomic region (view in browser)





>retro_mputfur_1112
ATGTCAACTGGCATAGTTGTTTTCCTTTCTTCATATGATGAAGATCAGGGATCTAAACTT
ATCCAAAAAACCAGAGGCACCGCATGTTCCCGCTGGAATGGCGGGGTTTGCAGCAATTAA
TTGTTGCAAATGGATTATATAAACTGAAGAGCAGGGGAAATACTAAAATGTCTGTTCACC
TGATCCACATGTCTGTGGCAGCCCAAGGCTTTGTTGTGGGAGCAATGACTCTCAGTATGG
GCTATTGCACTCATAAGGAATTCTGGGCAAAGCCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSTGTDVSLSSYDEDQGSKLIRKAKEAP-FVPIGMAGFAAIV-AYGLYKLKSRGNTKMSVHLIHMRVAAQGFVVGAMTLGMGYSMYKEFWAKP
MSTG..V.LSSYDEDQGSKLI.K........P....G......A.GLYKLKSRGNTKMSVHLIHM.VAAQGFVVGAMTL.MGY...KEFWAKP
Retrocopy
MSTGIVVFLSSYDEDQGSKLIQKTRGTA/MFPLEWRGLQQLIVANGLYKLKSRGNTKMSVHLIHMSVAAQGFVVGAMTLSMGYCTHKEFWAKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide