RetrogeneDB ID:
retro_mputfur_1114
Organism:
Location:
GL897020.1:2555160-2555847 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
62.07 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
THYN1
Parental gene aliases:
No gene alias available
Parental gene description:
thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:29560]

Genomic region (view in browser)





>retro_mputfur_1114
ATGCCTAGACCATGGAAGAGGCTGACTGGGGCTGTCGAGCCTGCTGGGCCGGACAAGAAG
GGACTAGTAGGAAGACGTACCAATACTGAGAACCCAGTGGGGGCATCAACTCAAGTGGAT
AACTCCAGCCCTCAGGAGGCTTCAGCCTCTAAAAACGGTGGGAAGAATCTAAGCAGTTAC
TGACTGATGACGTCAGAGCCAGGGAGCCCACTAGACAAAAGTGTAGAGGTGAAGTTCAGG
GCTGGGGATCTTAGAGCCCAGCCCGAGCAGACAGTATACTGGGATGACCTTCGCAACTCC
CAGCCCCAGAACTTCCTGGGACCCTGAAGTGGGAGGAGGAAGGCTTCTACCAGAGCAACT
GCGAAGAACCAGGCCTCAAAGGACTTGGGAAGCTTGAGAGGGAGGCTTCCTCAGACCACA
CACAGTTTGAGAAAAATAATTCCCATTATGATCCATCCAGCAAAGAAGACAACCCCAAAT
GGCCCAAGGTCAACGTATGGTTTGTTCAGATGATGAAGTTATTTCATGACCCTGGTGCCT
GAGCTCAAAACCCATCCCCAAGCTCACAAAGCCCCTGGAGGTCCCTTAAAAAATAGGGCT
CTCTCCACTTGCCAGAGGCTCTCCATTCAGCCCCTGACCCGAGAGGAGTTTGATTTTATT
TTGAGGCTGCAGGAAAAGGAACCAAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPKPRKRLGGA---AGPDNKGPAGKHTKTKNPAGALAAMGNSSPEKTSASKNCGKNLSSYWLMKSEPESRLEKGVDVKFSIEDLKAEPKQTACWDGVRNY
MP.P.KRL.GA...AGPD.KG..G..T.T.NP.GA.....NSSP...SASKN.GKNLSSY.LM.SEP.S.L.K.V.VKF...DL.A.P.QT..WD..RN.
Retrocopy
MPRPWKRLTGAVEPAGPDKKGLVGRRTNTENPVGASTQVDNSSPQEASASKNGGKNLSSY*LMTSEPGSPLDKSVEVKFRAGDLRAQPEQTVYWDDLRNS


Parental protein
QARNFL-RAMKLEQEAFFYHSNCKEPGIAGLVKIVKEAYPDHTQFEKNSPYYDPSSKEDNPKWSMVDVQFVRMMK-RYITLA-ELKTHYQAHKTTGGPLK
Q..NFL....K.E.E..FY.SNC.EPG..GL.K...EA..DHTQFEKN...YDPSSKEDNPKW..V.V.FV.MMK....TL..ELKTH.QAHK..GGPLK
Retrocopy
QPQNFL/GTLKWEEEG-FYQSNCEEPGLKGLGKLEREASSDHTQFEKNNSHYDPSSKEDNPKWPKVNVWFVQMMK\YFMTLVPELKTHPQAHKAPGGPLK


Parental protein
DMALFTRQRLSVQTLTPEEFYFILSLEEKEPS
..AL.T.QRLS.Q.LT.EEF.FIL.L.EKEPS
Retrocopy
NRALSTCQRLSIQPLTREEFDFILRLQEKEPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide