RetrogeneDB ID:
retro_mputfur_1116
Organism:
Location:
GL897020.1:4686171-4687011 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.66 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1116
GTGGCGGATGAAAAAGCTAAGAAAGCAGATACTAAGGAAAAGAAACCTGAAGCCAAGGAG
GCTAATGCCAGTGGCAAAGCTAAGAAGGGTAACCTGAAGGCTAAAACGCCAAAGAAGGGG
AAGACCCACCGCAGCTGAAACCCTGTCCTTGTCAGAGGAATTGGCAGATACTCCCAGTCA
GTTATGTATTCCAGAAAGGCCATGTACAAGAAATATTCGGCAGCTAAGGAGAAGAAAAAG
GAGAAGGTTGTTGCTACTGTCACAAAACCAGGTGGTGGTGACAAGAACGGTGGTAGCCAG
GTGGTTAAACTTGGCAAAATGCTGAGGTATTATCCTACTGAAGATGTGCCTCGAAAGCTG
TTGAGCCTTGGCAAAAAACCTTTCAGCGCATGAGAAAACTGCAAGTTAACATCACCCCTG
GGACCATTTTGATCATCTTCACTGGGCACCACAGAGGCAAGTAGTTTTCCTGAAGCAACT
GAACAGTGGTTTGCTACTTGTGACTGGACCTCTGTCCCTCAATCCAGTTCCTCTGCATAG
AACACACCAGAAATTCGCCATTGGTACTTCTACCAAAATTTATATCAGCAGTGTGAAAAT
CCCCAAACATCTCACTGATGCTTACTTCAAGAAGAAGAAGCTGCATAATCCCAGACATCA
GGAGGGTGAGATCTTTGATACCAAGAAAGAGAAATATGGGATTACAGAGCATGGCAAGGT
TGATCAGAAAGCTACAGACTTGCAATTCTGCCAAAAATCAAGGCTGTTCTTCAACTTCAA
GGCTACCTCCACTCTGTGTTTTCTCTCACAAATGGAGTATACCCTCACAAATTAGTGTTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAGEKAEKPDTKEKKPEAKKTDGGGKAKKGNKKAKTPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSRVEKKKKEKVLATVTKPVGGDK
.A.EKA.K.DTKEKKPEAK.....GKAKKGN.KAKTPKKGK.H.S.NPVLVRGIGRYS.S.MYSRKAMYK.KYSAAK.....KKKEKV.ATVTKP.GGDK
Retrocopy
VADEKAKKADTKEKKPEAKEANASGKAKKGNLKAKTPKKGKTHRS*NPVLVRGIGRYSQSVMYSRKAMYK-KYSAAK----EKKKEKVVATVTKPGGGDK


Parental protein
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRG-KRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATS
NGG..VVKL.KM.RYYPTEDVPRKLLS.GK.K.F.Q..RKL...ITPGTI..I....H.....VVFLKQL.SGLLLVTGPLSLN.VPL.RTHQKF.I.TS
Retrocopy
NGGSQVVKLGKMLRYYPTEDVPRKLLSLGK/KTF-QRMRKLQVNITPGTI-LIIFTGHHR/RQVVFLKQLNSGLLLVTGPLSLNPVPLHRTHQKFAIGTS


Parental protein
TKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQ-ILPKIKAVPQLQGYLRSVFSLTNGVYPHKLVF
TKI.IS.VKIPKHLTDAYFKKKKL..PRHQEGEIFDT.KEKY.ITE..KVDQKA.D.Q.ILPKIKAV.QLQGYL.SVFSLTNGVYPHKLVF
Retrocopy
TKIYISSVKIPKHLTDAYFKKKKLHNPRHQEGEIFDTKKEKYGITEHGKVDQKATDLQ/ILPKIKAVLQLQGYLHSVFSLTNGVYPHKLVF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide