RetrogeneDB ID:
retro_mputfur_1117
Organism:
Location:
GL897020.1:5421961-5422437 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.75 %
Coverage:
99.38 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_mputfur_1117
ATGACCAATACAAAGGGAAAGAGCAGAGGCATCCGCTATCTGTTCTCTAGGCCATTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATATGAATCTTCAAGAAAGGTGCTATTACA
GACATCAAGGAAATGGGCAGTGTTCCAAAAGTACTGCCCCACAAATGTTACTATGGCAAA
ACTAGAAGAATCTGCAGGACTGCCTAGCATGCTATTGGTATTGCTGTAAACAAACACATT
AAGGGTATGATTCTTGCCATGCAAATTAATGTACAAGTTGAGCATATTAAGCACTCTAAA
GCCAAGATAGCTTCCTGAAGCATGTGAAGGAAAATGATCAGAAAAAGAAGGAAGTCAAAG
AGAAAGTTACTTGGGTTTAACTGAAGTATTAGCTTGCTCCACCCAGAGAATCACACTTTG
TGAGAACCAAGGGAAAGGAGCCTGAGCAGTTGGAGCCTATACCCTATGAATTCATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGK.RG.RY.FSRPFRKHGVVPLATY..I.KKG.I.DIK.MG.V.K..PHKCY.GKT.R......HA.GI.VNK..KG.ILA..INV..EHIKHSK
Retrocopy
MTNTKGKSRGIRYLFSRPFRKHGVVPLATYI*IFKKGAITDIKEMGSVPKVLPHKCYYGKTRRICRTA*HAIGIAVNKHIKGMILAMQINVQVEHIKHSK


Parental protein
-SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM
.S.DSFLK.VKENDQKKKE.KEK.TWV.LK...APPRE.HFVRT.GKEPE.LEPIPYEFM
Retrocopy
/SQDSFLKHVKENDQKKKEVKEKVTWV*LKY*LAPPRESHFVRTKGKEPEQLEPIPYEFM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide