RetrogeneDB ID:
retro_mputfur_1120
Organism:
Location:
GL897020.1:3087317-3087737 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.0 %
Coverage:
73.94 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
COMMD1
Parental gene aliases:
No gene alias available
Parental gene description:
copper metabolism (Murr1) domain containing 1 [Source:HGNC Symbol;Acc:23024]

Genomic region (view in browser)





>retro_mputfur_1120
GGGGAACCAGCCATCACAGAGGAGCTGCTTTGGGGCCAGCTCTTCCCAGGGGTGTCACCT
GAGGAGTCCTGCCCCTTTCTGGCAAAGAGGAGGGGGTTTCTTAAGTCTATTGCTTCTACA
GACATGGATTTCAAACAATGGAGGCATTCTTGGCTGCTCGAACCAAAAAGCAATGTGGGA
GGTATCACAACTGACTGAGCTGCCATCATTTCCGAATTCTGGAAGAGGCATAAGACAAAA
ATTCGAGACAGCCTCATGAACCAGAACTGTTGGGACAATGGGCTTCGTGACCTGAGGTAC
AGAGTGGATGGCAGATCCCAGTCAAGGCACTCAACTCAAATATACACCCCTCTTGCCATA
ATGGGGCTGGAAACAGGGCAAAGTGGACAGGAATCTGAATCTCTTTGTTTGGCATTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GHQGITEELLRSQLYPEVSLEEFRPFLAKMRGILKSIASADMDFNQLE-AFLTAQTKKQGGISSDQAAVISKFWKSHKIKIRESLMNQSRWDSGLRGLSW
G...ITEELL..QL.P.VS.EE..PFLAK.RG.LKSIAS.DMDF.Q.....L.......GGI..D.AA.IS.FWK.HK.KIR.SLMNQ..WD.GLR.L..
Retrocopy
GEPAITEELLWGQLFPGVSPEESCPFLAKRRGFLKSIASTDMDFKQWRHSWLLEPKSNVGGITTD*AAIISEFWKRHKTKIRDSLMNQNCWDNGLRDLRY


Parental protein
RVDGKSQSRHSAQIHTPVAIMELEIGKSGQESEFLCLEFD
RVDG.SQSRHS.QI.TP.AIM.LE.G.SGQESE.LCL.FD
Retrocopy
RVDGRSQSRHSTQIYTPLAIMGLETGQSGQESESLCLAFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide