RetrogeneDB

RetrogeneDB ID:
retro_mputfur_1123
Organism:
Ferret ( Mustela_putorius_furo )
Location:
GL897021.1:1123348-1124673 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.59 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
2


Parental gene:
ENSMPUG00000011690
Parental gene symbol:
TUBB
Parental gene aliases:
No gene alias available
Parental gene description:
tubulin, beta class I [Source:HGNC Symbol;Acc:20778]

Genomic region (view in browser)





>retro_mputfur_1123
GTGAGGGAAATTGTGCACATCCAGGCCAGTTAGTGTGGTAACCAGATCAGTGCGAAGTTC
TGGGAGGTAATCGGTAATGAACATAGCATCGACCCCACTGGAAGCTACCACAGTGACAGT
GACCTGCAGCTGGATCACATCTCCACATTCGACAATGAAGCTACACATGGCAAATATGTT
CCTCGTGCTATCTTGGTGGATCTAGAACCAGGGACCATGGACTCTGTTTGCTCAGGTCCT
TTTGGGCAGATACTAAGACCAGACAACTTTGTTTTTTGGTCACTCTGGGGCAGGAAACAA
CTGGGCCAAGGGCCACTATACAGAGGGGGCTGAGCTGGTTGACTCAGTCCTGGATGTGGT
GAGGAAGGAGGCCGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTGACCCATTCACTGGG
TGAGGGCACAGGCTCTGGAATGGGCATCTTGCTCATCAGCAAGATCTGAGAAGAGTATCC
CAACCACATCATGAACACCTTCAGTGTGGTACCCTCACCCAAAGTGTCTGACACTGTGGT
CGAGCCCTATAATGTCACCCTTTCTATCCATCAGTTGGTAGAGAACACAGATGAGTCATA
TTGCATTGACAATGAGGCCCTTTATGACATCTGCTTCTGCACTCTCAAGCTGACCATACC
AACTTATGGAGACCAGAACCACTTCGTCTCAGCCACCACAAGTGGTGTCACCACCTGTCT
CCACTTCCCTGGTCAGCTCATTGCTGACCTCCAGAAGCAGCCGTCAACATGCATTCCCAC
AGCTCCACTTCTTCATCCTGGATTTGCACCTCTAACCAGCTGTGGAAGCCAGCAGTATCA
GGCCCTCACTATGCCTGAACTCACCCAGCAGGTCTCTGATGCCAAGAACAAGATGGCTGC
CTGTGACCCCTGCCATGGCTGTTACCTCACTGTGGCTGCTGTCTTCATGGGTGAATGTCC
ATGAAGGAGGTAGATGAGCAGATGCTCAACATGCAAAAAAGAATAGTAGCTACTTTGTGA
AGTGGATCCCCAACAACGTCAAGATAGGAGTCTGCAATATCCCACCTTGTGGCTTCAAGA
TGGCAGTCACCTTCATTGGAAATAGCACAGCCATCCAGGAGTTCTTCAAGTGCATCTCAG
AGCAGTTCATGGCCATGTTCCTGTACCAGGCCTTCCTCTTCTGGTACACAGGTGAGGGCA
TGGACAAGATGGAATTCACTGAAGCTGGGAGCAACATGAATGACCTTGTCTCTGAGTACC
TGCAGTACCAGGATGCCACCACAGAAGAGGAGGAAGATTTTGGTGAGGAGGCTGAAGAGG
AGGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF-GQSGAGN
.REIVHIQA..CGNQI.AKFWEVI..EH.IDPTG.YH.DSDLQLD.IS...NEAT.GKYVPRAILVDLEPGTMDSV.SGPFGQI.RPDNFVF.G.SGAGN
Retrocopy
VREIVHIQAS*CGNQISAKFWEVIGNEHSIDPTGSYHSDSDLQLDHISTFDNEATHGKYVPRAILVDLEPGTMDSVCSGPFGQILRPDNFVF\GHSGAGN


Parental protein
NWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNIFSVVPSPRVSDTVVEPYNATLSVHQLVENTDET
NWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG.GTGSGMG.LLISKI.EEYP..IMN.FSVVPSP.VSDTVVEPYN.TLS.HQLVENTDE.
Retrocopy
NWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGEGTGSGMGILLISKI*EEYPNHIMNTFSVVPSPKVSDTVVEPYNVTLSIHQLVENTDES


Parental protein
YCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVP-FPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKN
YCIDNEALYDICF.TLKLT.PTYGD.NH.VSAT.SGVTTCL.FPGQL.ADL.K......P..P.LH...PGFAPLTS.GSQQY.ALT.PELTQQV.DAKN
Retrocopy
YCIDNEALYDICFCTLKLTIPTYGDQNHFVSATTSGVTTCLHFPGQLIADLQKQPSTCIPTAPLLH---PGFAPLTSCGSQQYQALTMPELTQQVSDAKN


Parental protein
MMAACDPRHGRYLTVAAVFRGR-MSMKEVDEQMLNVQ-NKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLH
.MAACDP.HG.YLTVAAVF.G..MSMKEVDEQMLN.Q..KNSSYFV.WIPNNVK..VC.IPP.G.KMAVTFIGNSTAIQE.FK.ISEQF.AMF...AFL.
Retrocopy
KMAACDPCHGCYLTVAAVFMGE/MSMKEVDEQMLNMQ/KKNSSYFVKWIPNNVKIGVCNIPPCGFKMAVTFIGNSTAIQEFFKCISEQFMAMFLYQAFLF


Parental protein
WYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
WYTGEGMD.MEFTEA.SNMNDLVSEY.QYQDAT.EEEEDFGEEAEEEA
Retrocopy
WYTGEGMDKMEFTEAGSNMNDLVSEYLQYQDATTEEEEDFGEEAEEEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide






stat4u