RetrogeneDB ID:
retro_mputfur_1131
Organism:
Location:
GL897023.1:405615-406099 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.33 %
Coverage:
81.31 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
FCF1
Parental gene aliases:
No gene alias available
Parental gene description:
FCF1 rRNA-processing protein [Source:HGNC Symbol;Acc:20220]

Genomic region (view in browser)





>retro_mputfur_1131
GGGAAGCAAAAGAAAGCAAGAAAGTATGCAACCATGAAGCGAATGCTTAGTCTCCAAGAT
CAGAGGCTTAAAGAGAAGGATAGATTAAAACCTAAAAAGAAAGGAAAGAAAGATCCCAGT
GCACTCAAGGAAAGAGAAGTCCCCCAACACCCTTCCTGCTTGTTCTTCCAATATAACACA
CAGCTGGGCTCACCTTACCACATCGTGGTTGATACAAACTTCATCAACTTTTCTGTTAAA
GGTCAAACTTGACTTAGTACGGTCAATGATGGATTGTCTTTATACCAAGTATATCCCTTA
TATAACTGACTGTGTAATGGCTGAAATTGAGAAACTGGGATAAAAGTATCAAGCAGATCT
AAAGATTGCCAAGGATCCAAGATCTGAAAGATTACCATGCACACACAAAGGAACCTATGC
AGATGACTGCTTCATACAGAGAGTAACTAGGCACAAGTGTTAGTTGACCCGGACCTTAAA
CAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKQKKARKYATMKRMLSLRDQRLKEKDRLKPKKKEKKDPSALKEREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSI-KAKLDLVQSMMDCLYAKCIP
GKQKKARKYATMKRMLSL.DQRLKEKDRLKPKKK.KKDPSALKEREVPQHPSCLFFQYNTQLG.PYHI.VDTNFINFS..K.KLDLV.SMMDCLY.K.IP
Retrocopy
GKQKKARKYATMKRMLSLQDQRLKEKDRLKPKKKGKKDPSALKEREVPQHPSCLFFQYNTQLGSPYHIVVDTNFINFSV\KVKLDLVRSMMDCLYTKYIP


Parental protein
CITDCVMAEIEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDR
.ITDCVMAEIEKLG.KY...L.IAKDPR.ERLPCTHKGTYADDC..QRVT.HKC....T...
Retrocopy
YITDCVMAEIEKLG*KYQADLKIAKDPRSERLPCTHKGTYADDCFIQRVTRHKC*LTRTLNK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide