RetrogeneDB ID:
retro_mputfur_1132
Organism:
Location:
GL897023.1:907176-907708 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.68 %
Coverage:
73.47 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
YWHAQ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]

Genomic region (view in browser)





>retro_mputfur_1132
AAGACAGAGCTGATCCAAAAGGCAAAACTGACTGAGCAGGCTGAGCACCAGGATGATATG
GCCAAGTGCATGAAGGCTGTGATGGAGTGGGCCACTGAGTTGTCCAACGAGGAGAGAAAC
CTGCTTTGGGGGCCTACTAGAACCTGATAGTGGACCACTGGTCCACCTGGAGGGTCATCT
GGAGCAGGGAGCAGAAAACCTCTAATAAGAAGTTGCAGAGGATTAAGGATTTTCAGTAGA
AAGTGGAGTCTGAACTAAGGTCCATCTGCACCATGGTGCTGTAATTGTTGGATTAGTATT
TAATAACCAATGCAACTAATCCAGAGAGTAAGTTCTTACATCTGAAAATGAAGGGACATT
ACTTCCAGTACCTCACTGAAGTTGCATGTGGTTATGGTACAAAACAAACTATAGATAATT
CCCAAGGAGATCACCAAGAGACTTTTGATATAAGCAAGAAAGAGATGCAACCCACACACT
CCATCTGTCTGGACTGGTATTTTACTATGAGATCCTTAATTACCCATATCTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLL-SVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELL
KTELIQKAKL.EQAE..DDMA.CMKAV.E...ELSNEERNLL...AY.N......S.WRVI.S.EQKT..S.KKLQ.IKD...KVESELRSICT.VL.LL
Retrocopy
KTELIQKAKLTEQAEHQDDMAKCMKAVMEWATELSNEERNLL/LGAY*NLIVDHWSTWRVIWSREQKT--SNKKLQRIKDFQ*KVESELRSICTMVL*LL


Parental protein
DKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRL-GLALNFSVFYYEIL
D.YLI.NATNPESK...LKMKG.YF.YL.EVACG...KQTIDNSQG..QE.FDISKKEMQPTH.I.L.GL........Y..L
Retrocopy
D*YLITNATNPESKFLHLKMKGHYFQYLTEVACGYGTKQTIDNSQGDHQETFDISKKEMQPTHSICL/GLVFYYEILNYPYL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide