RetrogeneDB ID:
retro_mputfur_1137
Organism:
Location:
GL897023.1:4300001-4300346 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.65 %
Coverage:
60.62 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1137
ACCAGTAATTGAAAGGATCTGAGGATTACAGTGAAACTGACTATTCAGAACACACCGGCC
CAGATTGAAGTAGCACCTTCTGCCTCTGCCCCAATTATCAGAGCCTTCAAGGAACTTCCA
AGAGACAGAAAGAAGCAGAAAAACATTAAGCACAGTGGAAATACCAAATCTGATGAGACT
GTCCACATTCCCCAGCATATGCAGCATTGATCCTTAGCCAGAGAACTCTCTGGAATCATT
AAAGAGATCCTAGAGACTGCTTGGTCTGTTGGCTGCAATGTTGATGGCTACCACCCTCAT
GACATTGTAGAGAACATCAATAGTGGTGCAGTGAAATGCCCAGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRH
T...K.LRITVKLTIQN..AQIEV.PSASA.II.A.KE.PRDRKKQKN...KHSGN...DE.V.I...M.H.SLARELSG.IKEIL.TA.SVGCNVDG.H
Retrocopy
TSN*KDLRITVKLTIQNTPAQIEVAPSASAPIIRAFKELPRDRKKQKN--IKHSGNTKSDETVHIPQHMQH*SLARELSGIIKEILETAWSVGCNVDGYH


Parental protein
PHDIIDDINSGAVECPA
PHDI...INSGAV.CPA
Retrocopy
PHDIVENINSGAVKCPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide