RetrogeneDB ID:
retro_mputfur_1138
Organism:
Location:
GL897023.1:28779-29192 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.5 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL23
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L23 [Source:HGNC Symbol;Acc:10316]

Genomic region (view in browser)





>retro_mputfur_1138
ATGTCTGAGCAAGGATATGGTGGGTTCTCCATTGCAAAATTCTGGATTTCCCTGGGTCTA
CCAGTAAGACCTGTGATCAACTGTGTTGACAACACAGGAGCCAAAAATCTGTTTATTATC
TTGGTAAAGGGGATCAAGGGATGACTAAGCAGAATTACTGGTGCTGGTGTGGGTACCATG
GTGAGGCCACAGTGAAGAAAGGCAAACCAGAGCCCAGAAAGAAGGCACCTCCAGCAGTGG
TAATTCCACAATGAAAGAATACTGTGGAAAGTTAGTGTGTTTATTTTGAAGATAACATGG
GGGTCATGGTAAACAATAAAGGTAAAATGAAAGGTCCTGCTATCGCAGAACCAGTGGCAA
AGGAGTGTGCAGATCTGTGGCCCAAGATTGCATCCAATGCTCGAAGGATTGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVM-ATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFE
MS..G.GG.S.AKF.ISLGLPV..VINC.DNTGAKNL.II.VKGIKG.L.R...AGVG.MV..ATVKKGKPE.RKK..PAVVI.Q.K.......V...FE
Retrocopy
MSEQGYGGFSIAKFWISLGLPVRPVINCVDNTGAKNLFIILVKGIKG*LSRITGAGVGTMVR/ATVKKGKPEPRKKAPPAVVIPQ*KNTVES*CVY--FE


Parental protein
DNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA
DN.GV.VNNKG.MKG.AI..PVAKECADLWP.IASNA..IA
Retrocopy
DNMGVMVNNKGKMKGPAIAEPVAKECADLWPKIASNARRIA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide