RetrogeneDB ID:
retro_mputfur_1139
Organism:
Location:
GL897023.1:1795231-1795678 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.64 %
Coverage:
58.43 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPA1
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152]

Genomic region (view in browser)





>retro_mputfur_1139
GACCCTTTGGCATCTCTCAAATCACTGACTTACCTAAGTATTCTAAGAAATCCTGTAACA
AATAAGAAGCATTACAGACTATATGTAATTTATAAAGTTCCGCAAGTCAGAGTACTGGAT
TTCCAGAAGGTGAAACTAAAAGAGCGTCAGGAAGCAGAGAAAATGTTCAAGGGCAAACGA
GGTGCACAACTTGCAAAGGATATTGCCAGGAGAAGCAAAACTTTCAACCCAGGTGCTGGT
TTGCCAACTGACAAGAAGAAAGGTGGGCCATCTCCAGGAGATGTAGAAGCAATCAAGAAT
GCTATAGGGAATGCGTCTACCCTGGCTGAAGTGGAGGGGCAGAAGGGCTTGCTGCAGTCC
GGGCAGATACCTGGCAGGGAATGCAGATCAGGTCCCACTGATGATGGAGAAGAGGAGATG
GGAGAAGACACAGTCACAAATGGGTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKN
DPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKN
Retrocopy
DPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKN


Parental protein
AIANASTLAEVERLKGLLQSGQIPGRERRSGPTDDGEEEMEEDTVTNGS
AI.NASTLAEVE..KGLLQSGQIPGRE.RSGPTDDGEEEM.EDTVTNGS
Retrocopy
AIGNASTLAEVEGQKGLLQSGQIPGRECRSGPTDDGEEEMGEDTVTNGS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide