RetrogeneDB ID:
retro_mputfur_1140
Organism:
Location:
GL897024.1:223269-223854 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
89.8 %
Coverage:
63.23 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
NANOG
Parental gene aliases:
No gene alias available
Parental gene description:
Nanog homeobox [Source:HGNC Symbol;Acc:20857]

Genomic region (view in browser)





>retro_mputfur_1140
ATGAGTGAGGATCCCACTCTGCCCCAGTGCCTGCCTGGCCCCAGACCACCCGGGTCTAGG
GACTCTTCTCCAATGCTTGAGGTTTGCAGGCCTGAAGAAAATTACACATTCCTACAAATG
TCATCTGCTAAGACGCTCCACATGGAGTCCGTCTCTCCTCTTCCTTCCTCCATGGATCTG
CTTGTTCAGGACAGCCCCGATTCCTCCACCAGTCCCAAGATGAAACTACCACCCACTTCT
GCAAAGGAGAGAATGGGGAGGAATGAAGACACAGCCCAGGGCAAGAAACAGATCAGGACC
GTGTTCTTTCAGACCCAACTCTATGTCCTCAATGATCGATTTCAGAGGCAGAAATAACTC
AGCCTCCAGCAGATGCAAGAACTTTCCAACATTCTGAACCTTAGCTATAAGCAGGTGAAG
ACCTGGTTCCAGAACCAGAGAATGAAATGTAAGAGGTGGCAGAAAAACCACTGGCCAAAG
GAGAGCAAGAGTGTGACTCAGAACAGCACAGCAGCCACGGAATACCCAGCCTTCTACTCC
TACCACCAGGGACACCTGATGAACACTTCTGCAAACCTTCCAATA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSADPAPPQCRSGPRPPGSRDSSPMPEVCRHEENYAFLQMSSAETPHAETVSPLPSSVDLLVQDSPDSSTSPKVKLPPTSAEERTGRREDTAQGKKQKIR
MS.DP..PQC..GPRPPGSRDSSPM.EVCR.EENY.FLQMSSA.T.H.E.VSPLPSS.DLLVQDSPDSSTSPK.KLPPTSA.ER.GR.EDTAQGKKQ.IR
Retrocopy
MSEDPTLPQCLPGPRPPGSRDSSPMLEVCRPEENYTFLQMSSAKTLHMESVSPLPSSMDLLVQDSPDSSTSPKMKLPPTSAKERMGRNEDTAQGKKQ-IR


Parental protein
TVFSQTQLYVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKCKRWQKNHWPKESKSVTQNSTAATEYPAFYSYHQGHLMNTSANLPI
TVF.QTQLYVLNDRFQRQK.LSLQQMQELSNILNLSYKQVKTWFQNQRMKCKRWQKNHWPKESKSVTQNSTAATEYPAFYSYHQGHLMNTSANLPI
Retrocopy
TVFFQTQLYVLNDRFQRQK*LSLQQMQELSNILNLSYKQVKTWFQNQRMKCKRWQKNHWPKESKSVTQNSTAATEYPAFYSYHQGHLMNTSANLPI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide