RetrogeneDB ID:
retro_mputfur_1143
Organism:
Location:
GL897024.1:2497863-2498393 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.22 %
Coverage:
63.44 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1143
CTGAAATGCCCTGCTGCTTCCAGAGCCACTATTCCTGCTGGCCGCTTAGTTCCTGTAGAC
TTCACTAGGCAGAGCCAGGCAGCCTCTGGGAGCTGAGACTTCAGATGGTTACTGATCCCA
GGGCTGCCCACCAGCCTCTCACAGAGGCATCTTACATTAACCTGCCTACAGTCGCTCTGT
GTAACACAGACCCTCCTCAGCATTGTGTGGACATGGCCGCTCCTTGCAACAACAAAGGGG
CTCACTCAGTGGGTCTGATGTGGTGGATACTAGGCTGGGAAGTTCTATGCACGTGTGGCA
CCATTTCCCACGAACACTCTTTGGAAATTACACCTGATCTCTAGTTCTACAGAGATCTTG
AAGAGATGGAAAAGGAAGAGCAGGCTACTGCTGGCGAGATTGTGACCGAGGAGGAATTTC
AAGGTGAATGGACTGCTCCAGCTCACGAATTCACCGGTACTCCACCTGAAGTCCAAGACT
GGTGTGAGGGCGTGCAGGCACCCTCTGTGCTGATTCAGCAGTTCCCTACT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LKFAAATGATPIAGRFTPGTFTNQIQAA-FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR
LK..AA..AT..AGR..P..FT.Q.QAA...E.RL..VTDPRA.HQPLTEASY.NLPT.ALCNTD.P...VD.A.PCNNKGAHSVGLMWW.L..EVL...
Retrocopy
LKCPAASRATIPAGRLVPVDFTRQSQAA/LWELRLQMVTDPRAAHQPLTEASYINLPTVALCNTDPPQHCVDMAAPCNNKGAHSVGLMWWILGWEVLCTC


Parental protein
GTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPT
GTIS.EH..E..PDL.FYRD.EE.EKEEQA.A...VT.EEFQGEWTAPA.EFT.T.PEV.DW.EGVQ.PSV.IQQFPT
Retrocopy
GTISHEHSLEITPDL*FYRDLEEMEKEEQATAGEIVTEEEFQGEWTAPAHEFTGTPPEVQDWCEGVQAPSVLIQQFPT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide