RetrogeneDB ID:
retro_mputfur_1145
Organism:
Location:
GL897024.1:5915850-5916527 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.27 %
Coverage:
76.87 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CD46
Parental gene aliases:
No gene alias available
Parental gene description:
CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]

Genomic region (view in browser)





>retro_mputfur_1145
CTTTGTCGACCAGGATACAAGCCTGTTTTACCTCCTCTTCCCATGTCTTCCGTTTGTCAG
GCTAATAACATGTGGACACCTCTTCAGGAGGCTTGTACAGCAAAACAATGTCAGCATCCA
AGAGAACCCGTAAATGGCCAGTTAGCCGCTGTGAATGGATCTTTTTCCTTTGGTTCGCAG
ATTCACTATTCTTGTAATGAGGGTTATCGGCTAGTTGGAGAAAGAATTCTATACTGTGAA
ACTTCTACTGCTGATGAAAGAAAAGTGACTTGGAGTGATGATCTCCCACTATGTATAAGG
ATAATGTGTCCACCACCTGGAAAAATACCAAATGGAAAATATACCGGTAGTGAGAAGGAT
GAATTTGAATATAATGAAGTGGTAATTTACAGTTGTAATCCTTCAAATGGACCAGATGAA
TATTCACTTGTTGGAGAGAGTAATCTTATTTGTACTGGCAATGGTGTAAGGAGTAGTAAC
CCTCCTGAGTGTAAAGTCGTCAAATGTCCATTTCCAAACCCTGAAAATGGAAGACTGTTA
TCAGGATTCAGAAAAAAATACTACTACAAAGCACAGTCACATTTGAATGCGACCCGGGTT
ATTACCATGAGGGTGAGAACACAGCAGTCTGTGGTAGTAACAGTATTTGGGAGCCTGCGA
AGCCAACGTGTCTTAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VCRPGYKPVVPPRPMSSVCQANNMWTPLQEACTAKQCQHPGEPVNGQLVAVNGSFAFGSQIHYSCNEGYRLVGQRILYCEISTADERKVTWSDDPPLCIR
.CRPGYKPV.PP.PMSSVCQANNMWTPLQEACTAKQCQHP.EPVNGQL.AVNGSF.FGSQIHYSCNEGYRLVG.RILYCE.STADERKVTWSDD.PLCIR
Retrocopy
LCRPGYKPVLPPLPMSSVCQANNMWTPLQEACTAKQCQHPREPVNGQLAAVNGSFSFGSQIHYSCNEGYRLVGERILYCETSTADERKVTWSDDLPLCIR


Parental protein
IMCPPPGKIPNGKYTGSEKDEFEYNEVVIYSCNPSNGPDEYSLVGESNLICTGNGVWSSNPPECKVVKCPFPNPENGRLLSGFRKKYYYKA-TVTFECNP
IMCPPPGKIPNGKYTGSEKDEFEYNEVVIYSCNPSNGPDEYSLVGESNLICTGNGV.SSNPPECKVVKCPFPNPENGRLLSGFRKKYYYKA.TVTFEC.P
Retrocopy
IMCPPPGKIPNGKYTGSEKDEFEYNEVVIYSCNPSNGPDEYSLVGESNLICTGNGVRSSNPPECKVVKCPFPNPENGRLLSGFRKKYYYKA/TVTFECDP


Parental protein
GYYHEGENTAVCGSNSTWEPAKPTCLK
GYYHEGENTAVCGSNS.WEPAKPTCLK
Retrocopy
GYYHEGENTAVCGSNSIWEPAKPTCLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide