RetrogeneDB ID:
retro_mputfur_1146
Organism:
Location:
GL897025.1:5340497-5340893 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.4 %
Coverage:
92.41 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
Rpl26
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]

Genomic region (view in browser)





>retro_mputfur_1146
ATGAAGTTTAACCCCTTTGTGACTTCTGATGAGAGCAAGAACTGTAAAGAGCACTTCAAT
GCATCTCCCCACATTTGCAGGAAGATTATATCTTCCCCTCTTTCTAAAAAGCTGAGACAG
AAGTACAATGTTCGATCCATGCCCATCCAAAAGGATGAAATACAGGCTGTGCAAGGATAC
TACAAAGGTGAGCAAATGGGCAAAGCAGTCCAGGTTTACAGGAAGAAATACGTCATCTAC
ACTGAACGAATATACAAGAAGGCAAAAGGCACAACTGTCCATGTGGGCACTCAGCCTAAC
AAGATGGTTATCACTAGACTAAAATTGGACAAAGACTGCAAAAAGATCAAGCCAAATCTC
ACCAAGCAGGAAAGGAAAAGGGCAAATATAGGGAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIH
MKFNPFVTSD.SKN.K.HFNA..HI.RKI.SSPLSK.LRQKYNVRSMPI.K.DE.Q.V.G.YKG.Q.GK.VQVYRKKYVIY.ER....KA.GTTVHVG..
Retrocopy
MKFNPFVTSDESKNCKEHFNASPHICRKIISSPLSKKLRQKYNVRSMPIQK-DEIQAVQGYYKGEQMGKAVQVYRKKYVIYTERIYK-KAKGTTVHVGTQ


Parental protein
PSKVVITRLKLDKDRKKILERKAKSRQVGKEKGK
P.K.VITRLKLDKD.KKI.....K........GK
Retrocopy
PNKMVITRLKLDKDCKKIKPNLTKQERKRANIGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide