RetrogeneDB ID:
retro_mputfur_1157
Organism:
Location:
GL897028.1:4963785-4964193 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.12 %
Coverage:
72.34 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
GGCT
Parental gene aliases:
No gene alias available
Parental gene description:
gamma-glutamylcyclotransferase [Source:HGNC Symbol;Acc:21705]

Genomic region (view in browser)





>retro_mputfur_1157
TTTGGCAATTCCTAAGGCAAAACAAGTGAAACTTGGCATGGAGGTACAGCCACCATTTTT
CAAAGTCCTGGCAATGAAGTATGGGGAGTAGTACAGAAAATGAACAAAAGCAATTTGAGT
TCTCTGGATAAGCAAGACGGGGTTAAAAGTGGAACATATGTCCCAATAGAAGTTAATGTT
TATACTCAAGAAGGAAAAGAAATAACCTGTCGAAGTTATCAGATGAAAAACTATGAGAGT
GCTCCCCCATTGCCCCAGTATAAAAAGGTCATTTGCCTGGGTGCAAAAGAAAATGGTTTG
CCACTGGAGTATCAGAATAAGTTAAATGCAATAGAACCAAATGACTACAAAGGAGAAGTC
TCAGAAGATATTGAAAACATTATCAAAAAGGGAGAAACAAAAGCTCAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FGNSQGKTSETWHGGIATIFQSPGDEVWGVVWKMNKSNLSSLDKQEGVKSGTYVPIEVNVYTQEGKEITCRSYQMKNYESAPPSPQYKKVICLGAKENGL
FGNS.GKTSETWHGG.ATIFQSPG.EVWGVV.KMNKSNLSSLDKQ.GVKSGTYVPIEVNVYTQEGKEITCRSYQMKNYESAPP.PQYKKVICLGAKENGL
Retrocopy
FGNS*GKTSETWHGGTATIFQSPGNEVWGVVQKMNKSNLSSLDKQDGVKSGTYVPIEVNVYTQEGKEITCRSYQMKNYESAPPLPQYKKVICLGAKENGL


Parental protein
PLEYQKKLNAIEPNDYKGEVSEEIENIIKKGETKAH
PLEYQ.KLNAIEPNDYKGEVSE.IENIIKKGETKAH
Retrocopy
PLEYQNKLNAIEPNDYKGEVSEDIENIIKKGETKAH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide