RetrogeneDB ID:
retro_mputfur_1159
Organism:
Location:
GL897029.1:683266-683671 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.12 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
H3F3A
Parental gene aliases:
No gene alias available
Parental gene description:
H3 histone, family 3A [Source:HGNC Symbol;Acc:4764]

Genomic region (view in browser)





>retro_mputfur_1159
ATGGCTTTTACAAATCAGACTGCCTGCAAATTGACCAATGGTAAAGCATGGAGGAACCAA
CTGGCTATAAAAGCCGCTCCCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACTTCAT
CAGTACAGACCTGGTACTGTGGCAATCCATGAAATTAGACGTTATCAGAAGTCCACTGAC
CTGATCGGCAAATTGCCTTTCCACCGTCTGGTGTATGTAATTGTTCATGATTTCAAAACA
CATCTGTGCTTCCAGAATGCAGCTAGTGGTGCTTTGTAGGGGGCAAGTGGGGCCTATCTG
GTGGGCCTCTTTGAAGACACCATCCTGTGTGCTATCCATGCCAAATGTGTCATGGTCACA
CTGGAAGACCTCCAGCTAGCACACCACACACATGCAGAATATGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
MA.T.QTA.K.T.GKA.R.QLA.KAA.KSAPSTGGVKK.H.YRPGTVA..EIRRYQKST..LI.KLPF.RLV..I..DFKT.L.FQ.AA.GAL..AS.AY
Retrocopy
MAFTNQTACKLTNGKAWRNQLAIKAAPKSAPSTGGVKKLHQYRPGTVAIHEIRRYQKSTD-LIGKLPFHRLVYVIVHDFKTHLCFQNAASGAL*GASGAY


Parental protein
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
LVGLFEDT.LCAIHAK.V.....D.QLA.....E.A
Retrocopy
LVGLFEDTILCAIHAKCVMVTLEDLQLAHHTHAEYA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide