RetrogeneDB ID:
retro_mputfur_1160
Organism:
Location:
GL897029.1:5900712-5901301 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.27 %
Coverage:
76.95 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
AGPAT2
Parental gene aliases:
No gene alias available
Parental gene description:
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:325]

Genomic region (view in browser)





>retro_mputfur_1160
TCCACTAAGGCCTATTGCAGCGTTCAGATGGTAGAGAATATGAATATCATCAGGTGGTTT
GTCCAGGTCTTCAAGTACTTATAGGGCCTTCACTTTGAGACAGAGGGCCACCAGAAGATG
AAAGTGAACCATCCTTGTGTCATCATTTCTAACCACCAGAGTGACCTAAACATGATGGGC
CTCTTGGAGCCCCTCTGCAAGTGTTGTGTAGAACACCAAGCAGCAGTTCTCTTCACGGGG
CCTGTAGACCTGATCATGTGTCTCAGCGACATCTTTATCAGCTTGCAGTGCTCCAGGACA
AACTGTGACTGTGATGTCTGTCATGGGACAGGACATGGCCAGGGAGAACCTCAAAATGTG
GATCTACCCTGAGGATATGCAGAAGGATAGTTGGAACCTGCTACCTTTCAAGAAAGATGC
CTTTTACCTGGCAATTCACATCTTGCTGCCCATCATTTCTGTGGTATACCCCACATTCTT
CTCTTTCTATGACCCCAAAAGGGAGTTCTTCCTTTCGGGAACATTCAATGTGGAGATGTT
GGATGTCATCCCCACCAGTGGCCTCAGTATGACTGATGTCTCCAGGCTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
STRTVCAHQ-ARRVRIIKWFVVKFKYVFGLRFEIKGLQKLEVDHPCVIISNHQSILDMMGLMEALPERCVQIAKRELIFLGPVGLIMYLGGIFFINRQHS
ST...C..Q......II.WFV..FKY..GL.FE..G.QK..V.HPCVIISNHQS.L.MMGL.E.L...CV........F.GPV.LIM.L..IF.I..Q.S
Retrocopy
STKAYCSVQMVENMNIIRWFVQVFKYL*GLHFETEGHQKMKVNHPCVIISNHQSDLNMMGLLEPLCKCCVE-HQAAVLFTGPVDLIMCLSDIF-ISLQCS


Parental protein
RT-AMTVMADVGERMVRDNLKVWIYPEGTRNDNGDLLPFKKGAFYLAIQTQVPIIPVIYSSFSSFYNPKTKLFTSGTIKVEVLDAVPTRGLTVADVPKL
RT...TVM...G..M.R.NLK.WIYPE....D...LLPFKK.AFYLAI....PII.V.Y..F.SFY.PK...F.SGT..VE.LD..PT.GL...DV..L
Retrocopy
RT\TVTVMSVMGQDMARENLKMWIYPEDMQKDSWNLLPFKKDAFYLAIHILLPIISVVYPTFFSFYDPKREFFLSGTFNVEMLDVIPTSGLSMTDVSRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide