RetrogeneDB ID:
retro_mputfur_1165
Organism:
Location:
GL897030.1:3782084-3782442 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
77.87 %
Coverage:
92.31 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS15A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]

Genomic region (view in browser)





>retro_mputfur_1165
ATTGTGCGCAGGAATGTCCTGGCACATGCTCTCAAGAGCAGTAATAATGCTGAAAAGAGG
CAAAATGTCAGGTTCTTAGTGGGCCACATTCCAAAGTCATCATCCAGTTTCTCACTGTGA
TGGTGAAGCCTGGTTACATTGGTGAATTTGAAATCACTGATAATCACAGAGCGGGAAAAA
CTATTGTGAACCTCATGGGCGGTTAAATAAGTGTGGAGTGATCAGCCCCAGATTTGATGT
ACAACTGAAAGATCTAGAAAAATGGCCGAAGAACCTGCTTCCAACCTGCCAGTTTGGTTT
CATTGTACTGACAACCTCAGCTGCCATCATGAACCATGAAGAAGCAAGACAGAAACAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVRMNVLADALKSINNAEKR-GKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLT-GRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQ
.VR.NVLA.ALKS.NNAEKR..K.QVL..P.SKVI..FLTVM.K.GYIGEFEI.D.HRAGK..VNL..GRLNKCGVISPRFDVQLKDLEKW..NLLP..Q
Retrocopy
IVRRNVLAHALKSSNNAEKR/AKCQVLSGPHSKVIIQFLTVMVKPGYIGEFEITDNHRAGKTIVNLM/GRLNKCGVISPRFDVQLKDLEKWPKNLLPTCQ


Parental protein
FGFIVLTTSAGIMDHEEARRKH
FGFIVLTTSA.IM.HEEAR.KH
Retrocopy
FGFIVLTTSAAIMNHEEARQKH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide