RetrogeneDB ID:
retro_mputfur_1168
Organism:
Location:
GL897031.1:1325944-1326546 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.24 %
Coverage:
97.12 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L7 [Source:HGNC Symbol;Acc:10363]

Genomic region (view in browser)





>retro_mputfur_1168
ATGCTTCAAAAGGCAAGGAGGAAGCTTCTCTATGAAAAAGCTAAGCATCACCACAAGGAA
TATAGACAGAGATACAGAACTGAGATCCGAACGGCGAGGATGGCAAGAAAAGCCGGCAAC
TTCTACGCACCTGTGGAACCCAAGTTGGCATTTCTCATCAGGATCAGAGGGATCGATGGT
GTGAGGCCAAAGGCTCGGAAGGTGTTGCTTCTTTGCCTTTGTCAAATCGTCAATGGCACC
TCTGTTAAGCTCAACAAGGCTTCAGCTAACATGTTAAGGATTGTGGAACCATATACAGCA
TGGGGCACCCAAACCTGAAGTCAAAGAACAAACTGATCTACAAGCGTGGTTATGGCAAAA
TCAACAAGACGCGAATTGCCCTGACAGATAACACACGGACTGCCCGATCTCTTGGTAAAT
ACGGCATCATCTGCGTGGAGGATCTGATTCACGAAATGTAGACTGTTGGAAAACGTTTCA
AAGAGGCAAACGACTTTTGATGGCCCTTCCAATTATCTGCTCCACGAGGGGGAATGAAGA
AAAAGACCACTCATTTTGTGGAAGGTGGAGATGCTGGCAACAGAGAAGACCAGATCAACA
GG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYI
ML.KARRKL.YEKAKH.HKEYRQ.YRTEIR.ARMARKAGNFY.P.EPKLAF.IRIRGI.GV.PK.RKVL.LL.L.QI.NGT.VKLNKAS.NMLRIVEPY.
Retrocopy
MLQKARRKLLYEKAKHHHKEYRQRYRTEIRTARMARKAGNFYAPVEPKLAFLIRIRGIDGVRPKARKVL-LLCLCQIVNGTSVKLNKASANMLRIVEPYT


Parental protein
AWG-YPNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQ
AWG..PNLKS.N.LIYKRGYGKINK.RIALTDNT..ARSLGKYGIIC.EDLIHE..TVGKRFKEAN.F.WPF.LS.PRGGMKKKTTHFVEGGDAGNREDQ
Retrocopy
AWG/HPNLKSKNKLIYKRGYGKINKTRIALTDNTRTARSLGKYGIICVEDLIHEM*TVGKRFKEANDF*WPFQLSAPRGGMKKKTTHFVEGGDAGNREDQ


Parental protein
INR
INR
Retrocopy
INR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide