RetrogeneDB ID:
retro_mputfur_1174
Organism:
Location:
GL897034.1:2918398-2919442 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
95.43 %
Coverage:
82.35 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
BZW1
Parental gene aliases:
No gene alias available
Parental gene description:
basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:18380]

Genomic region (view in browser)





>retro_mputfur_1174
TTTGACATTCTGGTGGCCGGCGGAATGCTGGCCCCAGGTGGTACGCTGGCAGATGACATG
ATGCGGACAGATGTCTGTGTGTTCGCGGCACAAGAAGAGCTAGAGACCATGCAAGCATTT
GCTCAGGTTTTTAACAAGTTAATCAGGTGCTACAAATACCTGGAGAAAAGTTTTGAAGAT
GAAGTAAAAAAGCTGCTGCTGTTCTTAAAGGGTTTTTCAGAGTTGGAGAGAAACAAGCTG
GCTATGTTGACTGGTGTTCTTCTGGCTAATGGAACACTTAATGCATCCATTCTTAATAGC
CTTTATAATGAGAATTTGGTTAAAGAAGGGGTTTCAGCAGCTTTTGCTGTAAAGCTCTTT
AAATCATGGATAAATGAAAAAGATATCAATGCCGTGGCTGCAAGTCTTCAGAAAGTGAGC
ATGGATAACAGACTGATGGAACTTCGTCCTGCCAATAAACAGAGCGTTGAACACTTCACG
AAGTACTTTACAGAGGCAGGCTTGAAAGAACTTTTGGAATATGTTCGGAATCAGCAAACC
ATAGGAGCTCGAAAGGAACTCCAGAAAGACCTTCAAGAACAGATGTCCCGTGGTGACCCA
TTTAAGGATATAATTTTGTATGTCAAGGAGGAGATGAAAAAAAACAACATCCCAGAACCC
GTTGTCACTGGGATAGTCTGGTCCAACGTCATGAGCACCGTGGAGTGGAACAAAAAGGAA
GAGCTTGTAGCAGAGCAAGCCATCAAGCACTTGAAGCAATACAGCCCTCTACTTGCTGCC
TTTACTACTCACGGTCAGTCTGAGCTTCTGTTACTGAAGATTCAGGAGTATTGCTATGAC
AACATTCATTTCATGAAAGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAGCTGAAGTC
CTGAGTGAGGAGCCCATTCTGAAGTGGTATAAGGATGCACATGTTGCAAAGGGGAAGAGT
GTCTTCCTTGAGCAAATGAAAAAGTTTGTAGAGTGGCTCAAAAATGCTGAAGAAGAATCT
GAGTCTGAAGCTGAAGAAGGTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNS
FDILVAGGMLAPGGTLADDMMRTDVCVFAAQE.LETMQAFAQVFNKLIR.YKYLEK.FEDEVKKLLLFLKGFSE.ERNKLAMLTGVLLANGTLNASILNS
Retrocopy
FDILVAGGMLAPGGTLADDMMRTDVCVFAAQEELETMQAFAQVFNKLIRCYKYLEKSFEDEVKKLLLFLKGFSELERNKLAMLTGVLLANGTLNASILNS


Parental protein
LYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDP
LYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASL.KVSMDNRLMEL.PANKQSVEHFTKYFTEAGLKEL.EYVRNQQTIGARKELQK.LQEQMSRGDP
Retrocopy
LYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLQKVSMDNRLMELRPANKQSVEHFTKYFTEAGLKELLEYVRNQQTIGARKELQKDLQEQMSRGDP


Parental protein
FKDIILYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFTTQGQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYKA
FKDIILYVKEEM...NIPEPVV.GIVWS.VMSTVEWNKKEELVAEQAIKHL.KQYSPLLAAFTT.GQSEL.LLLKIQEYCYDNIHFMKAFQKIVVLFYKA
Retrocopy
FKDIILYVKEEMXXXNIPEPVVTGIVWSNVMSTVEWNKKEELVAEQAIKHL-KQYSPLLAAFTTHGQSEL-LLLKIQEYCYDNIHFMKAFQKIVVLFYKA


Parental protein
EVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD
EVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD
Retrocopy
EVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEAEEGD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide