RetrogeneDB ID:
retro_mputfur_1176
Organism:
Location:
GL897035.1:787165-787861 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.77 %
Coverage:
88.59 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1176
CCCAAGAAGCACTGGAAACACAGAGCCGTTCCCAAGTCTTGGACCCTGGATACACTGACA
GGTGTGTTTGCCCCTCGTCCATCTACTGGTTCCCCGTAAACTGAGAGAATGTCTCCCTCT
CATCGTTTTCCTCAGGACCAGAATTAAGTATGTCCTCACAGGATATGAAGTAAAGATTTG
TATCCAACATTTTATTGAGATTCATGGCAAGGTCCCAATTGATATAATCTACCTTGCTGG
TCTTATGGCTGTCATTAGCGCTGACAACACTGGGGAGGATTTCCATCAGATCTCTGACAC
CAAGGGTCACTTGACTACTGATAAGATAACACTTGAGGAGGCCAACTGTAAGTAGTCAAA
GTGAGACAGATCTTTGTGAGAACAAAAGGAATCCCTCATCTGGTGACCCATGATGTTCGT
ACCATCCGCTATCCCCACCCCCTCCTCAAGATGAATGACACCATTCAGACTGATTTGGAC
ACTGAAAAGATTACTGCTTTCATCAAGTCTGACCCTGGTAATCTGTGTATGGTGACCAGA
GGTGCTACCCTGGGAAGATTTGGTGTGATCCCCAACAGAGAGAGACACTGTGGTTCTTTT
GATGTTGTTCACATGAAAGATGCCAATGGCAACCGCTTTGCCACCAGGCTCTCCAACGTT
TTTGTCATTGGCAAAGGCAACAAACCATGGGTTTCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PKKHLKRVAAPKHWMLDKLTGVFAPRPSTG-PHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIY
PKKH.K..A.PK.W.LD.LTGVFAPRPSTG.P.KLRECLPLI.FLR.R.KY.LTG.EVK.IC.Q.FI.I.GKV..DI.Y.AG.M.VIS.D.TGE.F..I.
Retrocopy
PKKHWKHRAVPKSWTLDTLTGVFAPRPSTG\PRKLRECLPLIVFLRTRIKYVLTGYEVK-ICIQHFIEIHGKVPIDIIYLAGLMAVISADNTGEDFHQIS


Parental protein
DTKGRFAVHRITLEEAKYK-LCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHP
DTKG......ITLEEA..K...KVR.IFV.TKGIPHLVTHD.RTIRYP.PL.K.NDTIQ.DL.T.KIT.FIK.D.GNLCMVT.GA.LGR.GVI.NRERH.
Retrocopy
DTKGHLTTDKITLEEANCK/VVKVRQIFVRTKGIPHLVTHDVRTIRYPHPLLKMNDTIQTDLDTEKITAFIKSDPGNLCMVTRGATLGRFGVIPNRERHC


Parental protein
GSFDVVHVKDANGNSFAPRLSNIFVIGKGNKPWIS
GSFDVVH.KDANGN.FA.RLSN.FVIGKGNKPW.S
Retrocopy
GSFDVVHMKDANGNRFATRLSNVFVIGKGNKPWVS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide