RetrogeneDB ID:
retro_mputfur_1177
Organism:
Location:
GL897036.1:5203600-5204146 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.81 %
Coverage:
76.15 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
mRNA turnover 4-like protein [Source:UniProtKB/TrEMBL;Acc:G9KBH2]

Genomic region (view in browser)





>retro_mputfur_1177
CGGTTAAACTGGAAGCACAGCCGGATGTTCTTTGGCAAAAACCAGGTGATGATAGTGGCC
TTGGATCGAAGCCCAGCTGACGAGTACAGAGACAACCTACATCAGGTCAGCAAGAAGTTG
AGGGGTGAGGTCGGTGTCCTTTTCACCCACCGCAGCAAGGAGGAAGTGAAGGAGTGGTTT
ACGAAATACGCCAAAGTGGACTTCGCTCCAGCCGGAAACAAAGCAACTTTCACTGCGACC
CTGGACCCACGGCCCCTGGAGCAGTTCCCCCACTCCATGGAGCCACAGCTGAGGCAGCTG
GGCCTGCCCACCGCCCTCCGGAGAGGGGTGGTGACGCTGCTGTCCGACCACGAGGTGGGC
AAGGAGGGCGATATGCTGACCCCAGAGCAGGCCCGCGTGCTGAAGCTTTTCAGGTATGAG
ATGGCTGAATTCAAGGTCACCGTCAAATACATGTGGGATGCACAGTCCGGAAGGTTCCAG
CAGATGGGAGATGACTTGCCCGAGAGTGCATCCGAATCAGCAGAAGAGTCAGACGGGGAG
GACGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RSAWKHSRMFFGKNKVMMVALGRSPADEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYAEMDFARAGNKATFTVTLDPGPLEQFPHSMEPQLRQL
R..WKHSRMFFGKN.VM.VAL.RSPADEY.DNLHQVSKKLRGEVG.LFT.R.KEEV.EWFTKYA..DFA.AGNKATFT.TLDP.PLEQFPHSMEPQLRQL
Retrocopy
RLNWKHSRMFFGKNQVMIVALDRSPADEYRDNLHQVSKKLRGEVGVLFTHRSKEEVKEWFTKYAKVDFAPAGNKATFTATLDPRPLEQFPHSMEPQLRQL


Parental protein
GLPTALKRGVVTLLSDHEVCKEGDVLTPEQARVLKLFGYAMAEFKVTIKYMWDAQSGSFQHMGDDLPESASESAEESEGEDD
GLPTAL.RGVVTLLSDHEV.KEGD.LTPEQARVLKLF.Y.MAEFKVT.KYMWDAQSG.FQ.MGDDLPESASESAEES.GEDD
Retrocopy
GLPTALRRGVVTLLSDHEVGKEGDMLTPEQARVLKLFRYEMAEFKVTVKYMWDAQSGRFQQMGDDLPESASESAEESDGEDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide