RetrogeneDB ID:
retro_mputfur_1178
Organism:
Location:
GL897036.1:365801-366249 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.72 %
Coverage:
93.79 %
Frameshifts:
5
Stop codons:
0


Parental gene:
Parental gene symbol:
LAMTOR1
Parental gene aliases:
No gene alias available
Parental gene description:
late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068]

Genomic region (view in browser)





>retro_mputfur_1178
GAGGACTCAAACAAGGACTTAGAGGAACGGAAGCTGCTGCTGGACCCTGGCAGCCCCCCA
CCAAAGCTCTCAATGTAGCTGAGAGTAACTACCATAGCCTGCCTCCCACTCCCACAGATG
AGCAAGCCCTACTCTCCTCCAGCCTTGCTAAGACAGCCAGCAACATCAATGGCATGTCTG
CTGTGGACTTTCAGGGCACGGAACAGCATGAGCACACGGAGCCAGCGAAGCAATACAGCA
CACACTTGGCTGTGCTGAGCAGCAGTCTGACTCACTGGAAGAAGCTGCTGCCCCACCATC
TCTCACCAGCCAGTCCCACCAAATGCCGGCCAGCAAACCCTTCCCCCGTCCGACTTACAG
CAGGTCTACAGGAGAGCTGCTGATGCCGCAGTACACTTTCTCAGATCGGACAGGATGAGA
AGAGGAGCTGGTTGTACAGTTTGGGATC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EDSDQDREERKLLLDPSSPP-TKALNGAEPNYHSLPPTRTDEQALLSSILAKTASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPP-
EDS..D.EERKLLLDP.SPP.TKALN.AE.NYHSLPPT.TDEQALLSS.LAKTASNI...SA.D.QG.EQHE....A.QYST.LAVLSSSLTHWKKL.P.
Retrocopy
EDSNKDLEERKLLLDPGSPP/TKALNVAESNYHSLPPTPTDEQALLSSSLAKTASNINGMSAVDFQGTEQHEHTEPAKQYSTHLAVLSSSLTHWKKLLP/


Parental protein
LPSLTSQPHQVLASEP-VPFSDLQQVSRIAAYA-YSALSQIRVDAK-EELVVQFGI
.PSLTSQ.HQ..AS.P..P.SDLQQV.R.AA.A..S.LSQI..D.K.EELVVQFGI
Retrocopy
PPSLTSQSHQMPASKP/LPPSDLQQVYRRAADA/RSTLSQIGQDEK/EELVVQFGI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide