RetrogeneDB ID:
retro_mputfur_1179
Organism:
Location:
GL897036.1:2359030-2360008 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.09 %
Coverage:
81.66 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1179
ATCGAAAAATTTAAGGAGGAGGCTGCTCAGATGGGAAAGGGCTCCTACAACTATGCCTGG
GGTTGGATAAACTGAAAGTGAATGTGAATATAGTATCAACATTGATATTTCCCTGTGGAG
ATTCGAGAACAGCAAGTATTATGTGACCATCATTGATGTCCCAGGACACAGAGACTTTAT
CAAAAATATGAGTACAGGCATATCTCAGGCTGACTGTGCTGTCGTGATTGTTGCTGCTGG
TGTTGGTGAACTTAAAGGCGGTATTTCCAAGAATGGGCAGAACTGTGAACACGCCCTTCT
GGTTTACATACTGGGTGTAAACCAACTAATTGCTGATGTTAACAAAATCGATTCCACTGA
GCCATCCTACAGCCAGAAGAGATATGAGGAAATCATTAAGGAAGTTAATTTAACACTTAC
ATTAAGAAAATTGGCTACAACCCCAACACAGTAGTATTTGTGCCAATTTCTGGTTGGAAT
GGTGACAACATGCTGGAGCCAAATGCTAAGATGTCTTGGTTCAAGGGATGGAAAGTCACC
CATAAAGATGGGAATGCCCATGGAACCACGCTGCCTGAAGCTCGGGATTCTGTTCTGCCA
CCAACTCATTCAACCGTCAAGCCCTTGAATCTGCCTCTCCAGGACCTCTACTAAATTGGT
GGTATTGGTACTGTTTCTGTGGGCCTAGTGGAGACAGGTGCTCTTAAACCTGGCATGGTG
GTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTCAAGTCTGTTGAAATGTACCATGAA
GCTCTGAGTGAGGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTATCTATC
AAAGATGTTTGTTGTGGGAATGTGGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCA
GCTGGTTTCACGGCTCAGGTGATAATCCTGAACCATCCAGGCCAAATCAGTGCTGGATAT
GTACCTGTGCTGGATTGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IEKFEKEAAEMGKGSFKYAWV-LDKLK-AERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREH
IEKF..EAA.MGKGS..YAW..LDKLK..E.E..I.IDISLW.FE.SKYYVTIID.PGHRDFIKNM.TG.SQADCAV.IVAAGVGE...GISKNGQ..EH
Retrocopy
IEKFKEEAAQMGKGSYNYAWG/LDKLK/SECEYSINIDISLWRFENSKYYVTIIDVPGHRDFIKNMSTGISQADCAVVIVAAGVGELKGGISKNGQNCEH


Parental protein
ALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEV--STYIKKIGYNP-DTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALD
ALL.Y.LGV.QLI..VNK.DSTEP.YSQKRYEEI.KEV.......K....P..TV.FVPISGWNGDNMLEP.A.M.WFKGWKVT.KDGNA.GTTL.EA.D
Retrocopy
ALLVYILGVNQLIADVNKIDSTEPSYSQKRYEEIIKEVNLTLTLRKLATTP/NTVVFVPISGWNGDNMLEPNAKMSWFKGWKVTHKDGNAHGTTLPEARD


Parental protein
CILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDP
..LPPT..T.KPL.LPLQD.Y.IGGIGTV.VG.VETG.LKPGMVVTFAPVNVTTEVKSVEM.HEALSEALPGDNVGFNVKNVS.KDV..GNVAGDSKNDP
Retrocopy
SVLPPTHSTVKPLNLPLQDLY*IGGIGTVSVGLVETGALKPGMVVTFAPVNVTTEVKSVEMYHEALSEALPGDNVGFNVKNVSIKDVCCGNVAGDSKNDP


Parental protein
PMEAAGFTAQVIILNHPGQISAGYAPVLDC
PMEAAGFTAQVIILNHPGQISAGY.PVLDC
Retrocopy
PMEAAGFTAQVIILNHPGQISAGYVPVLDC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide