RetrogeneDB ID:
retro_mputfur_1181
Organism:
Location:
GL897037.1:633081-633510 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.48 %
Coverage:
67.77 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
SNAP23
Parental gene aliases:
No gene alias available
Parental gene description:
synaptosomal-associated protein, 23kDa [Source:HGNC Symbol;Acc:11131]

Genomic region (view in browser)





>retro_mputfur_1181
ATGAATCATCTGTCATCAGAAGAAATTCAGCTTAGGGCTTACCAGTTTACTGATGGTTCT
CCGGGAAATACAAGGAAAATCCTGGTTTTAACCATTGAGTCTCAGGATGTTAAGAGTCAA
GACTAAGACTATGCTGGATGAATAAGGGATGCAAATAAACCATATACAGTAAGACATGGA
CCAAATAAGTAGAGCCATGGGAGAGGCAGCGAAAATTTTAGCAGAACTCAACAAGTGCTG
AGGCCTTGCTATCTGCCCGTGTAATAGGATAAAAAAGTTCCAGGCTGGTAAGGCTCATAG
GCAACAAAGAAAGATGGCAGAGACAACTCTTCCAACCAGGTAATATCTATGCAGCCAGGC
CATGTGACAAATGGTCAGGCTTAGCAGGCAACCACAAGTGCCATCAATGGCAGATACATT
AGACATATA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDNLSSEEIQLRAHQVTDESLESTRRILGLALESQDAG-IKTITMLDEQGEQLNRIEEGMDQINKDMREAEKTLTELNKCCGLCVCPCNRTKNFESGKAY
M..LSSEEIQLRA.Q.TD.S...TR.IL.L..ESQD....KT.TMLDE.G.Q................EA.K.L.ELNKC.GL..CPCNR.K.F..GKA.
Retrocopy
MNHLSSEEIQLRAYQFTDGSPGNTRKILVLTIESQDVK\VKTKTMLDE*GMQIXXXXXXXXXXXXXXXEAAKILAELNKC*GLAICPCNRIKKFQAGKAH


Parental protein
K-ATWGDGGDNSPSNVVSKQPGRVTNGQPQQTTTGAASGGYIKRI
..AT..DG.DNS...V.S.QPG.VTNGQ..Q.TT.A..G.YI..I
Retrocopy
R/ATKKDGRDNSSNQVISMQPGHVTNGQA*QATTSAINGRYIRHI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide