RetrogeneDB ID:
retro_mputfur_1183
Organism:
Location:
GL897037.1:4841007-4841471 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.46 %
Coverage:
54.51 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
FAM92A1
Parental gene aliases:
No gene alias available
Parental gene description:
family with sequence similarity 92, member A1 [Source:HGNC Symbol;Acc:30452]

Genomic region (view in browser)





>retro_mputfur_1183
AGAAAACGTCAGCGAAATCCTGATGTTCGACATATTATTTCTCATGTGGAAACTGAACTG
CAGAGAGTTGCAGTGGATGCTCCGTGAACAACTCGTCTTCTGGAGGAAAATACTGACCAT
TTTGAAAAGCGGAAAATAAAGGATATAAAGACTGTATTTTCAGAATGTATCATTACCAAA
ATGCTATTTTTTGACAAAGCATTGAAGGTCTACACTGCTGTGTATCAAAGCATACAAAAG
ATTGATGAAGAGGATTTAGAGGTTTTCCAAAATTCTCTGTAACCACCAAATTCTTCATCT
GGTTTACAAATGGTAAAAGCAAATTCGAAGTGGCCCCTTCAAAGATCACTTTCAGCTAAG
TGTGTATCTGGAATAGGTCAGTTATCCACCCCTCCACTAAGAAAGGATCAACAAGCAGGA
GTTGATGAAGGGGGCAAAGAGTCAGACTTACAGAAGAAGAAAAT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RTRQRNPSDRHVILQAETELQRATMDATRTTRHLEETIDNFEKQKIKDIKTIFSEFITIEMLFHGKALEVYTAAYQNIQKIDEEEDLEVFRNSVYPPDYS
R.RQRNP..RH.I...ETELQR...DA..TTR.LEE..D.FEK.KIKDIKT.FSE.I...MLF..KAL.VYTA.YQ.IQKID.EEDLEVF.NS..PP..S
Retrocopy
RKRQRNPDVRHIISHVETELQRVAVDAP*TTRLLEENTDHFEKRKIKDIKTVFSECIITKMLFFDKALKVYTAVYQSIQKID-EEDLEVFQNSL*PPNSS


Parental protein
SRLDIVRANSKSPLQRSLSAKCISGTGQVSTCRLRKDQQAEDDDEEDEDLD-VTEEEN
S.L..V.ANSK.PLQRSLSAKC.SG.GQ.ST..LRKDQQA...DE.....D..TEEEN
Retrocopy
SGLQMVKANSKWPLQRSLSAKCVSGIGQLSTPPLRKDQQA-GVDEGGKESD/LTEEEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide