RetrogeneDB ID:
retro_mputfur_1189
Organism:
Location:
GL897038.1:3922423-3922851 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.72 %
Coverage:
84.09 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1189
CTGAAGGTCTGGGTCACACTTCAAGAGTACAAGGTGGTGGGGAGCTGCCTGCCCACCCCG
AATGTCGCACTCTGCCCCTCTACTGGGTGTGAATCTTTGCACCTAATCATGTGGTCACCG
AGTTCTGCTTCTGGCACTTTTCATCTCAGCTGAAGAAGATGAAGTCTTCAGGGGAAATTG
TTGACTGTGGACAGGTGTTGGAGAAATCTCCCTTGTGGGTAAAGAGTGCTGGCATCCGGC
TGTGCTATGACTCCCACAGGGTCTCCCACATCACTGGCCAGGAGCTGAACATGGCAGGCA
CTGTCATCCTTTGCTGTGAGTTGTGGGCACTGGCACCGCACCAGGCCCACTCTATCCAGA
TCACAAAGATGAAGGAGACTACAGCCAGCAAGTGCCGCCAAATGGCCATCAGATAGTTCC
AGGACTCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKASGTLREYKVVGRCLPTP-KCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRD
.K...TL.EYKVVG.CLPTP..CRT.PLY...IFAPNHVV....FW.F.SQLKKM.KSSGEIV.CGQV.EKSPL.VK..GI.L.YDS....H....E...
Retrocopy
LKVWVTLQEYKVVGSCLPTP/ECRTLPLYWV*IFAPNHVVTEFCFWHFSSQLKKM-KSSGEIVDCGQVLEKSPLWVKSAGIRLCYDSHRVSHITGQE---


Parental protein
LTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDS
L..AG.V..C.....A.....AHSIQI.K..E..ASKCR..A...F.DS
Retrocopy
LNMAGTVILCC-ELWALAPHQAHSIQITKMKETTASKCRQMAIR*FQDS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide