RetrogeneDB ID:
retro_mputfur_1194
Organism:
Location:
GL897039.1:1348885-1349571 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.21 %
Coverage:
82.44 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_mputfur_1194
ATGTCTGGAGCCCCGTATGTCCTGCAAATAAAGGAAGAAGATGTCCTCTGATTCCTTGCA
GCAGGAACCCACTTAGGTGGCACCAACCTTGACTTCCAAATTGAACAGTACATCTACAAA
AGGAAGAGTGATGGCATCTACATCATAAATCTGAAGAGAACCAGGAGAAGCTTCCGCTGG
CAGCTTGTACCATTGTTGCCATTGAAAACCCAGCTAATGTCAGTGTCATATCAGCCAAGA
ATACGGGCCAGCAAGCTGTGCTGAAGTTTGCTGCTGCTACTTCAACAACTTGATTGCCAG
CCACTTCACTCTTGGAAACTTCACTAACCAGATCCAGGCAGCCGTCTGAACGCTGAGACT
TTGGTGGTTACTGATCCCAGGGCTGACCACCAGGCTCTTACAGAGGCATCTTATATTAAC
CTGCCTACCATCGCTCTGTGTAATGCAGACTCTGCTCTGCACTATGTGGACATTGCCATC
CCTCGCAACAAGAAGGGGGTCAGTCAGTGGGCCTGATGTGGTGGACGCTGGCCAGGGAAT
TTCTGCCCACGTGTGGCACCATTTCCCGTGATCACCCATGGGAGGTCATCCCTGATCTCT
AGCTCTACAGAGATCCTAAAGAGATTGAAAAGAAAGGGCAGGCCTCTAATGAGAAGGCTG
TGACCAAGGAGGAATTTCAGGGTGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRT-WEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGAT-P
MSGA..VLQ.KEEDVL.FLAAGTHLGGTNLDFQ.EQYIYKRKSDGIYIINLKRT..EKL.LAA..IVAIENPA.VSVIS..NTGQ.AVLKFAAAT..T..
Retrocopy
MSGAPYVLQIKEEDVL*FLAAGTHLGGTNLDFQIEQYIYKRKSDGIYIINLKRT/QEKLPLAACTIVAIENPANVSVISAKNTGQQAVLKFAAATSTT/L


Parental protein
IAGRFTPGTFTNQIQAAFREPRL-LVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGA-HSVGLMWWMLAREVLRMRGTISREHPWE
IA..FT.G.FTNQIQAA....RL.LVVTDPRADHQ.LTEASY.NLPTIALCN.DS.L.YVDIAIP.N.KG...SVGLMWW.LARE.L...GTISR.HPWE
Retrocopy
IASHFTLGNFTNQIQAAV*TLRL/LVVTDPRADHQALTEASYINLPTIALCNADSALHYVDIAIPRNKKGV/QSVGLMWWTLAREFLPTCGTISRDHPWE


Parental protein
VMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGE
V.PDL..YRDP.EIEK..QA..EKAVTKEEFQGE
Retrocopy
VIPDL*LYRDPKEIEKKGQASNEKAVTKEEFQGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide