RetrogeneDB ID:
retro_mputfur_1195
Organism:
Location:
GL897040.1:4622727-4623131 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.04 %
Coverage:
81.07 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CENPV
Parental gene aliases:
No gene alias available
Parental gene description:
centromere protein V [Source:HGNC Symbol;Acc:29920]

Genomic region (view in browser)





>retro_mputfur_1195
ACCTTGGAGTACCAGGCCCTGGTGAGCCACATCGGAAGCTGCCACTATGGAGCAGTTCAC
TTTGAACTTTAGGCCTCAGAAGACTTGCACATCTTCACTACTGCAGCATCTGCAAAAAAG
CGGAATACACCCTTCGTGGTACTGGCTTCTCGTTTCAAGCTCCTGAAGGAAGCTGAGGGC
ACAACCACATACACACTCAGCAAGCACAAAGCACAGCACACCTTCCGTAAGAGATACGCC
ATTCAGAGATTTACACTCCCCCATCAAACCCTGGAGGCTTTGGAATCATTCCATACTGCC
TGGCTAAGGATGCTGTGTGGAGTGTGAGCATTGAGAAATTCAGTGGCAGTGACTGCGGAA
AAGCCACGAAAGAGCACAAGACCATCAAGAACATGTTTAAGGAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFEYQGLVKHTGGCHCGAIRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAENITTYTFNTHKAQHTFCKRCGVQSF-YTPRSNPGGFGIA
T.EYQ.LV.H.G.CH.GA..FE..AS.DLHIF....S...KK.N..F.V.ASRFKLLK.AE..TTYT...HKAQHTF.KR...Q.F.YTP.SNPGGFGI.
Retrocopy
TLEYQALVSHIGSCHYGAVHFEL*ASEDLHIFTTAASA--KKRNTPFVVLASRFKLLKEAEGTTTYTLSKHKAQHTFRKRYAIQRF/YTPPSNPGGFGII


Parental protein
PHCLDEGTVRSVVIEEFNGTDWEKAMKEHKTIKNMSKE
P.CL....V.SV.IE.F.G.D..KA.KEHKTIKNM.KE
Retrocopy
PYCLAKDAVWSVSIEKFSGSDCGKATKEHKTIKNMFKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide